miRNA display CGI


Results 101 - 120 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 50429 0.71 0.974914
Target:  5'- aGCCGCuCGUgCAGCGugcgcguGAAgcuGCGCCg -3'
miRNA:   3'- -CGGUG-GUA-GUCGCuu-----CUUauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 1408 0.71 0.974914
Target:  5'- gGCCGCgGcggCGGCGggGGc--GGCGCCc -3'
miRNA:   3'- -CGGUGgUa--GUCGCuuCUuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 44288 0.71 0.977541
Target:  5'- cGCCGCCAgCGGCGGgccAGGGccgcugcccgcGGGCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCU---UCUUa----------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 38228 0.71 0.977541
Target:  5'- cGCuCACCGU--GCGGAGcg-GGGCGCCg -3'
miRNA:   3'- -CG-GUGGUAguCGCUUCuuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 92101 0.71 0.978533
Target:  5'- cGCCcCCGUCccgcagcacgugguaGGCGAAGAAUAGcucgggcuGgGCCa -3'
miRNA:   3'- -CGGuGGUAG---------------UCGCUUCUUAUU--------UgCGG- -5'
23847 5' -47.6 NC_005261.1 + 108448 0.71 0.97996
Target:  5'- gGCCGagcagcgcgUCGUCGGCGAGGAucuccGCGUCg -3'
miRNA:   3'- -CGGU---------GGUAGUCGCUUCUuauu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 106007 0.71 0.97996
Target:  5'- aGCCGCagaaacgaCAGCGAGGAccgGAggcACGCCa -3'
miRNA:   3'- -CGGUGgua-----GUCGCUUCUua-UU---UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 97694 0.71 0.97996
Target:  5'- gGCUGCCGgggCGGUGggGAGacggcgGGugGCCc -3'
miRNA:   3'- -CGGUGGUa--GUCGCuuCUUa-----UUugCGG- -5'
23847 5' -47.6 NC_005261.1 + 83014 0.71 0.97996
Target:  5'- aGCCGCCGUCgccGGCGcccccGGGAGggccgcuCGCCg -3'
miRNA:   3'- -CGGUGGUAG---UCGC-----UUCUUauuu---GCGG- -5'
23847 5' -47.6 NC_005261.1 + 71152 0.71 0.97996
Target:  5'- cGCCGCCc-CGGCaGGcucuGGGAUGAACGCg -3'
miRNA:   3'- -CGGUGGuaGUCG-CU----UCUUAUUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 58690 0.71 0.97996
Target:  5'- gGCCcggGCCGUCAGgGcgcgccgcuGAGAGgu-GCGCCa -3'
miRNA:   3'- -CGG---UGGUAGUCgC---------UUCUUauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 13664 0.71 0.97996
Target:  5'- cGCCGCCG-CGGgGggGGcgcgGGGCGCg -3'
miRNA:   3'- -CGGUGGUaGUCgCuuCUua--UUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 55981 0.71 0.980871
Target:  5'- cGCCGCCGUCgccaucggcaaccgcGGCGggGGcgGgggcggggaaGACGCa -3'
miRNA:   3'- -CGGUGGUAG---------------UCGCuuCUuaU----------UUGCGg -5'
23847 5' -47.6 NC_005261.1 + 116021 0.71 0.982179
Target:  5'- aGCCGCCGaCGGCGcgcauGGUcuGCGCCa -3'
miRNA:   3'- -CGGUGGUaGUCGCuuc--UUAuuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 94906 0.71 0.982179
Target:  5'- cGCgCGCUggaGGCGAGGAAgGAGCGCUu -3'
miRNA:   3'- -CG-GUGGuagUCGCUUCUUaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 90389 0.71 0.982179
Target:  5'- gGCC-CCGcCGGCGggGcu--GGCGCCc -3'
miRNA:   3'- -CGGuGGUaGUCGCuuCuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 88705 0.71 0.982179
Target:  5'- gGCCGCCGUUGaccuggccuGCGggGugcgcGAUGAGgGCCa -3'
miRNA:   3'- -CGGUGGUAGU---------CGCuuC-----UUAUUUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 23466 0.71 0.982179
Target:  5'- cGCCagGCCcgCGGCGgcGAGU--GCGCg -3'
miRNA:   3'- -CGG--UGGuaGUCGCuuCUUAuuUGCGg -5'
23847 5' -47.6 NC_005261.1 + 17162 0.71 0.982179
Target:  5'- cGUCACCcgCGGCGcGGGcGUGGGCaGCCc -3'
miRNA:   3'- -CGGUGGuaGUCGCuUCU-UAUUUG-CGG- -5'
23847 5' -47.6 NC_005261.1 + 1984 0.71 0.982179
Target:  5'- gGCCggGCCAUCGGCGGccaguucgcGGggUccacGGCGUCg -3'
miRNA:   3'- -CGG--UGGUAGUCGCU---------UCuuAu---UUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.