miRNA display CGI


Results 121 - 140 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 67417 0.71 0.98239
Target:  5'- cGCCGCCAgCAGCGcccgcggccAGCGCCc -3'
miRNA:   3'- -CGGUGGUaGUCGCuucuuau--UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 120578 0.71 0.983817
Target:  5'- cGUCAUCGUCAGCGucGuggccguCGCCu -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCuuauuu-GCGG- -5'
23847 5' -47.6 NC_005261.1 + 116513 0.71 0.984208
Target:  5'- cGCCGCCG-CGGCGGcgcGAGgcc-CGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUu--CUUauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 73798 0.71 0.984208
Target:  5'- cGCgGCgGUCGGCGcgcAGAAgccGCGCCc -3'
miRNA:   3'- -CGgUGgUAGUCGCu--UCUUauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 57709 0.71 0.984208
Target:  5'- gGCCucguCCAUCuGCacGAGGuagAGGCGCCg -3'
miRNA:   3'- -CGGu---GGUAGuCG--CUUCuuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 32279 0.71 0.984208
Target:  5'- cGCCGCCGcUGGUGcuGGAggcGGGCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCUUa--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 10893 0.71 0.984208
Target:  5'- cGgCGCCAaCGGCGgcGGcgGcAGCGCCg -3'
miRNA:   3'- -CgGUGGUaGUCGCuuCUuaU-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 3458 0.71 0.984208
Target:  5'- gGCCGCCGcgcCGcGCGucGAGUAccGCGCCa -3'
miRNA:   3'- -CGGUGGUa--GU-CGCuuCUUAUu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 48291 0.71 0.984208
Target:  5'- cGCCGCUucCAGCGAGGccucgggGGGCGCg -3'
miRNA:   3'- -CGGUGGuaGUCGCUUCuua----UUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 12590 0.71 0.984208
Target:  5'- gGgCGCC--UAGCGGAGGAUGGacuucagccGCGCCg -3'
miRNA:   3'- -CgGUGGuaGUCGCUUCUUAUU---------UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 5509 0.71 0.984208
Target:  5'- gGCCGCgG-CAGCGgcGGcgAGGcCGCCg -3'
miRNA:   3'- -CGGUGgUaGUCGCuuCUuaUUU-GCGG- -5'
23847 5' -47.6 NC_005261.1 + 108715 0.7 0.985521
Target:  5'- -gCGCCA-CGGCGAAGAGcGcgcgggccagcggcGGCGCCg -3'
miRNA:   3'- cgGUGGUaGUCGCUUCUUaU--------------UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 93664 0.7 0.985701
Target:  5'- cCCACCGguccgcgggcggCGGCGccGGcgGGGCGCCg -3'
miRNA:   3'- cGGUGGUa-----------GUCGCuuCUuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 51712 0.7 0.986057
Target:  5'- uCCACCAgCuGCGggGggUcguGCGCa -3'
miRNA:   3'- cGGUGGUaGuCGCuuCuuAuu-UGCGg -5'
23847 5' -47.6 NC_005261.1 + 28798 0.7 0.986057
Target:  5'- cGCgGCCG-CGGCGGAGGcagc-CGCCg -3'
miRNA:   3'- -CGgUGGUaGUCGCUUCUuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 31788 0.7 0.987735
Target:  5'- uGCUGCCcgCGGCGcAGu----GCGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCuUCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 43287 0.7 0.987735
Target:  5'- gGCCGCCuuUCccGCGggGG----GCGCCg -3'
miRNA:   3'- -CGGUGGu-AGu-CGCuuCUuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 45952 0.7 0.987735
Target:  5'- gGCCGCCAg-GGCGccguuGAGcAUGcGCGCCa -3'
miRNA:   3'- -CGGUGGUagUCGC-----UUCuUAUuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 94145 0.7 0.987735
Target:  5'- uCCACCAgcgUCAGCGcccGggUcgcgaAGGCGCCc -3'
miRNA:   3'- cGGUGGU---AGUCGCuu-CuuA-----UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 101469 0.7 0.987735
Target:  5'- cGCCGCCggCGGCGgcGugau-GCGCa -3'
miRNA:   3'- -CGGUGGuaGUCGCuuCuuauuUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.