miRNA display CGI


Results 61 - 80 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 66502 0.67 0.999308
Target:  5'- cGgCACCAgCAGCGAcauuGgcGGCGCCu -3'
miRNA:   3'- -CgGUGGUaGUCGCUucu-UauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 39787 0.67 0.999308
Target:  5'- cGUCGCCGgggggCGGCGcGGccgccGGCGCCa -3'
miRNA:   3'- -CGGUGGUa----GUCGCuUCuuau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 50778 0.67 0.999308
Target:  5'- cGCaCACCG-CGGCGgcGGccgccccGGCGCCg -3'
miRNA:   3'- -CG-GUGGUaGUCGCuuCUuau----UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 89853 0.67 0.999308
Target:  5'- gGCCGCggcguCAUCGGCGAguacugcauucAGGAcucGGCGCUg -3'
miRNA:   3'- -CGGUG-----GUAGUCGCU-----------UCUUau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 70636 0.67 0.999308
Target:  5'- uGCCaagcGCCG-CGGCGcuGAGguucGGCGCCg -3'
miRNA:   3'- -CGG----UGGUaGUCGCuuCUUau--UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 30563 0.67 0.999308
Target:  5'- cGCCGCCGgggccUCGGaCGggGAcggGGACGg- -3'
miRNA:   3'- -CGGUGGU-----AGUC-GCuuCUua-UUUGCgg -5'
23847 5' -47.6 NC_005261.1 + 68717 0.67 0.999308
Target:  5'- cGCCgGCCcUCAcGCGGcgggcgccggcgGGAAgAAGCGCCc -3'
miRNA:   3'- -CGG-UGGuAGU-CGCU------------UCUUaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 34873 0.67 0.999214
Target:  5'- aCCGCCAUCGaCGAcacggagucggagucGGAGUcGGACGCg -3'
miRNA:   3'- cGGUGGUAGUcGCU---------------UCUUA-UUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 40267 0.67 0.999145
Target:  5'- gGCgGCCG-CGGCGggGcucAGUAGACGa- -3'
miRNA:   3'- -CGgUGGUaGUCGCuuC---UUAUUUGCgg -5'
23847 5' -47.6 NC_005261.1 + 118592 0.67 0.999145
Target:  5'- cGCCGCCG-CcGCGGAGcuc--GCGCUg -3'
miRNA:   3'- -CGGUGGUaGuCGCUUCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 36180 0.67 0.999145
Target:  5'- uGCCGCCggCAGCGc---AUGcGCGCUu -3'
miRNA:   3'- -CGGUGGuaGUCGCuucuUAUuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 5438 0.67 0.999145
Target:  5'- cGCgGCCG-CGGCGgcGGcaacAGCGCCc -3'
miRNA:   3'- -CGgUGGUaGUCGCuuCUuau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 85763 0.67 0.999145
Target:  5'- gGCCAgCAcCgAGCGccGGAAcagGAACGCCg -3'
miRNA:   3'- -CGGUgGUaG-UCGCu-UCUUa--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 113457 0.67 0.999145
Target:  5'- gGUCACgAUgAGCGgcGAGcugcuGCGCCc -3'
miRNA:   3'- -CGGUGgUAgUCGCuuCUUauu--UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 44930 0.67 0.999145
Target:  5'- aGCCGCCGaggagaguUCGGCGcugGAGAGccugcugcgGGACGCg -3'
miRNA:   3'- -CGGUGGU--------AGUCGC---UUCUUa--------UUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 77717 0.67 0.999145
Target:  5'- cGCCGCCcccCAGCcAAGc---GGCGCCg -3'
miRNA:   3'- -CGGUGGua-GUCGcUUCuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 106273 0.67 0.999108
Target:  5'- uGCCGCCGggCGGCccgugc-AAACGCCg -3'
miRNA:   3'- -CGGUGGUa-GUCGcuucuuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 77762 0.67 0.998949
Target:  5'- cGCaGCCGgggCGGCGggGAcgAcGAgGCCu -3'
miRNA:   3'- -CGgUGGUa--GUCGCuuCUuaU-UUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 91402 0.67 0.998949
Target:  5'- cGUCGCgccCGGCGAGGAcGUGgagcgcGACGCCg -3'
miRNA:   3'- -CGGUGguaGUCGCUUCU-UAU------UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 94623 0.67 0.998949
Target:  5'- cGCCGCCGcCGGCGccGucGUcgGCGCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCu-UAuuUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.