miRNA display CGI


Results 81 - 100 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 97938 0.67 0.998949
Target:  5'- gGCCGCCAgcucCGGCGGcaacgaGGGAgguGGCGgCg -3'
miRNA:   3'- -CGGUGGUa---GUCGCU------UCUUau-UUGCgG- -5'
23847 5' -47.6 NC_005261.1 + 93949 0.67 0.998949
Target:  5'- cGCCGCC-UCcgGGCGGucGGccGUcGACGCCa -3'
miRNA:   3'- -CGGUGGuAG--UCGCUu-CU--UAuUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 96943 0.67 0.998949
Target:  5'- cGCCcacggGCgCAUCGGCGggGcagc--CGCCg -3'
miRNA:   3'- -CGG-----UG-GUAGUCGCuuCuuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 77762 0.67 0.998949
Target:  5'- cGCaGCCGgggCGGCGggGAcgAcGAgGCCu -3'
miRNA:   3'- -CGgUGGUa--GUCGCuuCUuaU-UUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 127378 0.67 0.998949
Target:  5'- uGUCGuuGgcggCGGCGAGGAGcccGGCGCCc -3'
miRNA:   3'- -CGGUggUa---GUCGCUUCUUau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 94623 0.67 0.998949
Target:  5'- cGCCGCCGcCGGCGccGucGUcgGCGCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCu-UAuuUGCGg -5'
23847 5' -47.6 NC_005261.1 + 119649 0.67 0.998949
Target:  5'- cGCCACCggCGGCGc-------GCGCCu -3'
miRNA:   3'- -CGGUGGuaGUCGCuucuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 104694 0.67 0.998949
Target:  5'- gGCCACCG-CccCGAAGAGcggcUGGACgGCCg -3'
miRNA:   3'- -CGGUGGUaGucGCUUCUU----AUUUG-CGG- -5'
23847 5' -47.6 NC_005261.1 + 64065 0.67 0.998949
Target:  5'- cGCCACCGgcugccgcaCGGUGgcGuAGUAGuugGCGCCc -3'
miRNA:   3'- -CGGUGGUa--------GUCGCuuC-UUAUU---UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 91402 0.67 0.998949
Target:  5'- cGUCGCgccCGGCGAGGAcGUGgagcgcGACGCCg -3'
miRNA:   3'- -CGGUGguaGUCGCUUCU-UAU------UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 68595 0.67 0.998949
Target:  5'- gGCCgcgggagcgggGCCGaCGGCGuggggGAGGAUGcGCGCCc -3'
miRNA:   3'- -CGG-----------UGGUaGUCGC-----UUCUUAUuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 124441 0.67 0.998949
Target:  5'- cGCCGCCAcacCAGCcGGGGccGggUGCCc -3'
miRNA:   3'- -CGGUGGUa--GUCGcUUCUuaUuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 57995 0.67 0.998949
Target:  5'- cGCCGCCAaaaAGCGccAGGAcGUGGAagUGCCg -3'
miRNA:   3'- -CGGUGGUag-UCGC--UUCU-UAUUU--GCGG- -5'
23847 5' -47.6 NC_005261.1 + 51030 0.67 0.998949
Target:  5'- cGCCACC--CGGCGcuGuuccuggAGGCGCCu -3'
miRNA:   3'- -CGGUGGuaGUCGCuuCuua----UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 3536 0.67 0.998949
Target:  5'- gGCCGCC-UCGGCGcgcagcgcggcGGGcgc-GGCGCCg -3'
miRNA:   3'- -CGGUGGuAGUCGC-----------UUCuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 67862 0.67 0.998949
Target:  5'- aGCUGCUcgCggcaacucccgGGCGGcgcGggUAAGCGCCg -3'
miRNA:   3'- -CGGUGGuaG-----------UCGCUu--CuuAUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 34077 0.67 0.998928
Target:  5'- gGCCugCAUCcgccgcuGGCuGGAGG---GGCGCCc -3'
miRNA:   3'- -CGGugGUAG-------UCG-CUUCUuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 66706 0.67 0.998928
Target:  5'- gGCCGCgcUCAGCGA-------GCGCCg -3'
miRNA:   3'- -CGGUGguAGUCGCUucuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 111316 0.67 0.998815
Target:  5'- cGCCGCCGcCGcGCGcucgguuucaaaagaAAGAGccGGCGCCg -3'
miRNA:   3'- -CGGUGGUaGU-CGC---------------UUCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 106988 0.67 0.998717
Target:  5'- cGCgCACCgcGUCGGCcAGGuccgccGAGCGCCa -3'
miRNA:   3'- -CG-GUGG--UAGUCGcUUCuua---UUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.