miRNA display CGI


Results 101 - 120 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 8562 0.67 0.998717
Target:  5'- gGCCGCCccgggaAGUGAGGAcgcuggcaGAAUGCCa -3'
miRNA:   3'- -CGGUGGuag---UCGCUUCUua------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 20659 0.67 0.998717
Target:  5'- aCCGCCGguggcggCAGCGGcAGAGUGgaucAGCGUg -3'
miRNA:   3'- cGGUGGUa------GUCGCU-UCUUAU----UUGCGg -5'
23847 5' -47.6 NC_005261.1 + 12417 0.67 0.998717
Target:  5'- aGCCcuCCAggggCGGCGGAGGGcuugcGGCGUCg -3'
miRNA:   3'- -CGGu-GGUa---GUCGCUUCUUau---UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 71953 0.67 0.998717
Target:  5'- cCCACUggcGUCGGCGcGGGGcgcgGAGCGCg -3'
miRNA:   3'- cGGUGG---UAGUCGCuUCUUa---UUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 116141 0.67 0.998717
Target:  5'- uCCGCag-CAGCGAgaGGAAgcAGCGCg -3'
miRNA:   3'- cGGUGguaGUCGCU--UCUUauUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 103917 0.67 0.998717
Target:  5'- cGCCGCCAggucgggcgCGGCGucugccAGACGCUg -3'
miRNA:   3'- -CGGUGGUa--------GUCGCuucuuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 27647 0.67 0.998717
Target:  5'- cGCCGCCGUCGGgaCGAGGG------GCCc -3'
miRNA:   3'- -CGGUGGUAGUC--GCUUCUuauuugCGG- -5'
23847 5' -47.6 NC_005261.1 + 106988 0.67 0.998717
Target:  5'- cGCgCACCgcGUCGGCcAGGuccgccGAGCGCCa -3'
miRNA:   3'- -CG-GUGG--UAGUCGcUUCuua---UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 95085 0.67 0.998717
Target:  5'- cGCgACCGcgaCGGCGAGGcc--GAUGCCg -3'
miRNA:   3'- -CGgUGGUa--GUCGCUUCuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 80144 0.67 0.998717
Target:  5'- cGCUACCAcCGGCGgcGAAca---GCCc -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCUUauuugCGG- -5'
23847 5' -47.6 NC_005261.1 + 14079 0.67 0.998717
Target:  5'- gGCCA-CGUCGGCGAAGcacu--CGCg -3'
miRNA:   3'- -CGGUgGUAGUCGCUUCuuauuuGCGg -5'
23847 5' -47.6 NC_005261.1 + 115907 0.67 0.998717
Target:  5'- cGCCGUCGUCAGCGccGGc----CGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCUuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 122902 0.67 0.998717
Target:  5'- cGCCuCCGggaCGGCGuuGGAgcgcACGCCg -3'
miRNA:   3'- -CGGuGGUa--GUCGCuuCUUauu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 83591 0.67 0.998691
Target:  5'- gGCCGCCAgCAGCGcgucgcucucCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuucuuauuu-GCGG- -5'
23847 5' -47.6 NC_005261.1 + 110947 0.67 0.998691
Target:  5'- cGCCGCCcggCGGCccacccgGGAGAgcugcAUGuACGCCg -3'
miRNA:   3'- -CGGUGGua-GUCG-------CUUCU-----UAUuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 42037 0.67 0.998691
Target:  5'- gGCC-CCGUCGcgguacuGCGccGAAUcguGCGCCg -3'
miRNA:   3'- -CGGuGGUAGU-------CGCuuCUUAuu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 99112 0.67 0.998612
Target:  5'- uGCuCGCgAUCAGCGccGAGAGcugcuccagcuGCGCCg -3'
miRNA:   3'- -CG-GUGgUAGUCGC--UUCUUauu--------UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 88352 0.67 0.998557
Target:  5'- cGCCGCCG-CGGCGuucacaucgGAACgGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuucuua---UUUG-CGG- -5'
23847 5' -47.6 NC_005261.1 + 85381 0.67 0.998442
Target:  5'- cGCCGCCcUCgGGCuucuGGUAGGCGCCc -3'
miRNA:   3'- -CGGUGGuAG-UCGcuucUUAUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 98142 0.67 0.998442
Target:  5'- gGCgGCCGUCGGCGGcaAGGccgcGGGCGgCg -3'
miRNA:   3'- -CGgUGGUAGUCGCU--UCUua--UUUGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.