miRNA display CGI


Results 61 - 80 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 30785 0.66 0.999723
Target:  5'- gGCCGCgG-CGGUGGAGGugcuGGgGCCg -3'
miRNA:   3'- -CGGUGgUaGUCGCUUCUuau-UUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 31042 0.69 0.993918
Target:  5'- cGCCGCCGggucccCAGCGcGGcggGAGcCGCCg -3'
miRNA:   3'- -CGGUGGUa-----GUCGCuUCuuaUUU-GCGG- -5'
23847 5' -47.6 NC_005261.1 + 31117 0.66 0.999723
Target:  5'- cGCCGCCGaCGGCGGcuuc----CGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUucuuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 31446 0.82 0.546958
Target:  5'- cGCCGCC--CGGCGAGGAc-GAGCGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCUUCUuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 31681 0.66 0.999648
Target:  5'- gGCCGCgGcgCGGCGgcGGcugaucGUGaucGACGCCg -3'
miRNA:   3'- -CGGUGgUa-GUCGCuuCU------UAU---UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 31788 0.7 0.987735
Target:  5'- uGCUGCCcgCGGCGcAGu----GCGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCuUCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 32133 0.66 0.999723
Target:  5'- cGCCGCCAaCcGCuGggGGcucggcGCGCCg -3'
miRNA:   3'- -CGGUGGUaGuCG-CuuCUuauu--UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 32181 0.68 0.996795
Target:  5'- gGCCugCGggCGGCGcgcgcuGGAGcuGGCGCCc -3'
miRNA:   3'- -CGGugGUa-GUCGCu-----UCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 32279 0.71 0.984208
Target:  5'- cGCCGCCGcUGGUGcuGGAggcGGGCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCUUa--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 32414 0.8 0.644143
Target:  5'- uGCCGCCGcCGGCGAcgGGAGccccgccggccUGGGCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCU--UCUU-----------AUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 32501 0.8 0.65501
Target:  5'- cGgCGgCAUCGGCGggGggUccGCGCCg -3'
miRNA:   3'- -CgGUgGUAGUCGCuuCuuAuuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 33003 0.71 0.974914
Target:  5'- gGCCgACCGgggaAGgGggGAGggGGGCGCCg -3'
miRNA:   3'- -CGG-UGGUag--UCgCuuCUUa-UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 34077 0.67 0.998928
Target:  5'- gGCCugCAUCcgccgcuGGCuGGAGG---GGCGCCc -3'
miRNA:   3'- -CGGugGUAG-------UCG-CUUCUuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 34236 0.79 0.729917
Target:  5'- cGCgGCCGUCaucuggGGCGAAGAcUAcGACGCCg -3'
miRNA:   3'- -CGgUGGUAG------UCGCUUCUuAU-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 34873 0.67 0.999214
Target:  5'- aCCGCCAUCGaCGAcacggagucggagucGGAGUcGGACGCg -3'
miRNA:   3'- cGGUGGUAGUcGCU---------------UCUUA-UUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 35055 0.66 0.999723
Target:  5'- gGCgGCCGcgCGGCGgcGGucuccGCGCCc -3'
miRNA:   3'- -CGgUGGUa-GUCGCuuCUuauu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 35097 0.66 0.999419
Target:  5'- aGCCGCgGUgAGCGgcGAGccccccagcCGCCg -3'
miRNA:   3'- -CGGUGgUAgUCGCuuCUUauuu-----GCGG- -5'
23847 5' -47.6 NC_005261.1 + 35873 0.66 0.999723
Target:  5'- gGCCGCCuggguGCGA-----GAACGCCu -3'
miRNA:   3'- -CGGUGGuagu-CGCUucuuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 35907 0.66 0.999648
Target:  5'- cCCGCCGcggCAGCGcGGcccc-GCGCCg -3'
miRNA:   3'- cGGUGGUa--GUCGCuUCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 35977 0.66 0.999723
Target:  5'- gGCCGCUGUagCGGCGgcGGcuccuggcggcgGUAAuCGCCg -3'
miRNA:   3'- -CGGUGGUA--GUCGCuuCU------------UAUUuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.