miRNA display CGI


Results 81 - 100 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 36180 0.67 0.999145
Target:  5'- uGCCGCCggCAGCGc---AUGcGCGCUu -3'
miRNA:   3'- -CGGUGGuaGUCGCuucuUAUuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 36594 0.65 0.999772
Target:  5'- gGCCACCGggggggggCAGCGcuccu---GCGCCc -3'
miRNA:   3'- -CGGUGGUa-------GUCGCuucuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 37849 0.72 0.962155
Target:  5'- cGCCGCCGacuUCGGCGucccc--GACGCCu -3'
miRNA:   3'- -CGGUGGU---AGUCGCuucuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 37919 0.74 0.924559
Target:  5'- cGCCACCG-CuGCGc-GAGUacGAGCGCCg -3'
miRNA:   3'- -CGGUGGUaGuCGCuuCUUA--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 38228 0.71 0.977541
Target:  5'- cGCuCACCGU--GCGGAGcg-GGGCGCCg -3'
miRNA:   3'- -CG-GUGGUAguCGCUUCuuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 38488 0.68 0.996211
Target:  5'- gGCCGCgG-CGGCGucGAcugGAGCGUCg -3'
miRNA:   3'- -CGGUGgUaGUCGCuuCUua-UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 38638 0.66 0.999556
Target:  5'- cGCCGCCGaCGGUGAcGGugaAAGCGgCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUuCUua-UUUGCgG- -5'
23847 5' -47.6 NC_005261.1 + 39365 0.73 0.954325
Target:  5'- aGCCGCCucAUCGGCGGccGGGGaGGGCgGCCc -3'
miRNA:   3'- -CGGUGG--UAGUCGCU--UCUUaUUUG-CGG- -5'
23847 5' -47.6 NC_005261.1 + 39787 0.67 0.999308
Target:  5'- cGUCGCCGgggggCGGCGcGGccgccGGCGCCa -3'
miRNA:   3'- -CGGUGGUa----GUCGCuUCuuau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 40267 0.67 0.999145
Target:  5'- gGCgGCCG-CGGCGggGcucAGUAGACGa- -3'
miRNA:   3'- -CGgUGGUaGUCGCuuC---UUAUUUGCgg -5'
23847 5' -47.6 NC_005261.1 + 40678 0.68 0.997303
Target:  5'- -aCGCCGUCGG-GGAGcc--GGCGCCg -3'
miRNA:   3'- cgGUGGUAGUCgCUUCuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 41629 0.66 0.999444
Target:  5'- uGCgGCCcUCGGCGAccuuGAGgu-GCGCg -3'
miRNA:   3'- -CGgUGGuAGUCGCUu---CUUauuUGCGg -5'
23847 5' -47.6 NC_005261.1 + 41677 0.7 0.99062
Target:  5'- cGCuCACCucgCGGUguGAAGAGUAGA-GCCg -3'
miRNA:   3'- -CG-GUGGua-GUCG--CUUCUUAUUUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 42037 0.67 0.998691
Target:  5'- gGCC-CCGUCGcgguacuGCGccGAAUcguGCGCCg -3'
miRNA:   3'- -CGGuGGUAGU-------CGCuuCUUAuu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 42080 0.69 0.994276
Target:  5'- aGCCACCAgcaguaaacgaccgCGGUGAGGAug---UGCCg -3'
miRNA:   3'- -CGGUGGUa-------------GUCGCUUCUuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 42923 0.74 0.918658
Target:  5'- gGCCGCCG--GGCGAGuGggUGcggauccacccGACGCCg -3'
miRNA:   3'- -CGGUGGUagUCGCUU-CuuAU-----------UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 43068 0.72 0.957578
Target:  5'- aGCCACCAUCcuaAGCacaacgcUAAACGCCg -3'
miRNA:   3'- -CGGUGGUAG---UCGcuucuu-AUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 43158 0.69 0.993918
Target:  5'- cGCCGCCGaCAucGCGgcGcGAUAcGGCGCCg -3'
miRNA:   3'- -CGGUGGUaGU--CGCuuC-UUAU-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 43287 0.7 0.987735
Target:  5'- gGCCGCCuuUCccGCGggGG----GCGCCg -3'
miRNA:   3'- -CGGUGGu-AGu-CGCuuCUuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 43426 0.76 0.853794
Target:  5'- uCCGCCGcCGGCGggGAGcUGgcucGGCGCCu -3'
miRNA:   3'- cGGUGGUaGUCGCuuCUU-AU----UUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.