miRNA display CGI


Results 101 - 120 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 43598 0.68 0.996455
Target:  5'- -aCGCCGUCuccGGCGAGGAGggcgAGugcuucgugcuguggGCGCCc -3'
miRNA:   3'- cgGUGGUAG---UCGCUUCUUa---UU---------------UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 43794 0.66 0.999723
Target:  5'- gGgCGCCGcgGGUGAGGG---GGCGCCg -3'
miRNA:   3'- -CgGUGGUagUCGCUUCUuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 44034 0.73 0.951777
Target:  5'- gGCCGCCGcgCGGCGGccgcgggcgggcagcAGAuccaGGACGCCu -3'
miRNA:   3'- -CGGUGGUa-GUCGCU---------------UCUua--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 44240 0.66 0.999393
Target:  5'- gGCCGCC--CAGCGcgcggccGACGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCuucuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 44288 0.71 0.977541
Target:  5'- cGCCGCCAgCGGCGGgccAGGGccgcugcccgcGGGCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCU---UCUUa----------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 44853 0.76 0.836723
Target:  5'- aGCCGCag-CcGCGAGGAA-GAGCGCCg -3'
miRNA:   3'- -CGGUGguaGuCGCUUCUUaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 44930 0.67 0.999145
Target:  5'- aGCCGCCGaggagaguUCGGCGcugGAGAGccugcugcgGGACGCg -3'
miRNA:   3'- -CGGUGGU--------AGUCGC---UUCUUa--------UUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 45952 0.7 0.987735
Target:  5'- gGCCGCCAg-GGCGccguuGAGcAUGcGCGCCa -3'
miRNA:   3'- -CGGUGGUagUCGC-----UUCuUAUuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 47101 0.66 0.999444
Target:  5'- gGCCAgagcCCGUCcGUGAGGAcGUGcGCGUCc -3'
miRNA:   3'- -CGGU----GGUAGuCGCUUCU-UAUuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 47150 0.74 0.912488
Target:  5'- cGCCGgCGUCGGCGGccgAGAccaccagcgGGACGCCc -3'
miRNA:   3'- -CGGUgGUAGUCGCU---UCUua-------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 47265 0.75 0.885158
Target:  5'- cGCCGgcCCGcCGGCGAAGA----GCGCCg -3'
miRNA:   3'- -CGGU--GGUaGUCGCUUCUuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 47590 0.66 0.999723
Target:  5'- aGCCGCgCG-CGcGCGAGGGAgc--CGCCc -3'
miRNA:   3'- -CGGUG-GUaGU-CGCUUCUUauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 47691 0.67 0.998442
Target:  5'- gGCCGCCcgCGGCGccGcGUcgGCGgCg -3'
miRNA:   3'- -CGGUGGuaGUCGCuuCuUAuuUGCgG- -5'
23847 5' -47.6 NC_005261.1 + 48291 0.71 0.984208
Target:  5'- cGCCGCUucCAGCGAGGccucgggGGGCGCg -3'
miRNA:   3'- -CGGUGGuaGUCGCUUCuua----UUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 48845 0.68 0.997303
Target:  5'- cGCCGCCGcgCAGC-AGGccc-AGCGCCc -3'
miRNA:   3'- -CGGUGGUa-GUCGcUUCuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 49051 0.66 0.999431
Target:  5'- aGCCGCCGagcacggccagguUC-GCGAAGcgggcacGCGCCg -3'
miRNA:   3'- -CGGUGGU-------------AGuCGCUUCuuauu--UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 49195 0.77 0.809565
Target:  5'- gGCCcucgGCCGaCAGCGAGGGcgGGAgGCCg -3'
miRNA:   3'- -CGG----UGGUaGUCGCUUCUuaUUUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 49250 0.69 0.994781
Target:  5'- cGCCGCCG-CGGCGgcGuc--GGCGCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCuuauUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 49291 0.69 0.992943
Target:  5'- cGCagaaGCCcgCGGCGG----UGAGCGCCg -3'
miRNA:   3'- -CGg---UGGuaGUCGCUucuuAUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 49550 0.66 0.999444
Target:  5'- gGCCACCAcgugguUCAGC--AGcAUGGGCGUg -3'
miRNA:   3'- -CGGUGGU------AGUCGcuUCuUAUUUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.