miRNA display CGI


Results 121 - 140 of 379 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 49626 0.72 0.962155
Target:  5'- aGCuCGCCGUCgacgAGCGAGcGGAU--GCGCCc -3'
miRNA:   3'- -CG-GUGGUAG----UCGCUU-CUUAuuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 50033 0.68 0.997303
Target:  5'- aGCCGCCG-C-GCGAcGGugcAGCGCCg -3'
miRNA:   3'- -CGGUGGUaGuCGCUuCUuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 50231 0.69 0.99173
Target:  5'- cCCAUCGUCGGCGAauacaacugggccAGggUGGACa-- -3'
miRNA:   3'- cGGUGGUAGUCGCU-------------UCuuAUUUGcgg -5'
23847 5' -47.6 NC_005261.1 + 50429 0.71 0.974914
Target:  5'- aGCCGCuCGUgCAGCGugcgcguGAAgcuGCGCCg -3'
miRNA:   3'- -CGGUG-GUA-GUCGCuu-----CUUauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 50585 0.71 0.974363
Target:  5'- uCCGCCGcgAGCGggGAGggcagggagacgGGGCGCCc -3'
miRNA:   3'- cGGUGGUagUCGCuuCUUa-----------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 50633 0.7 0.99062
Target:  5'- uCCACgCGggCGGCGggGu---GGCGCCg -3'
miRNA:   3'- cGGUG-GUa-GUCGCuuCuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 50778 0.67 0.999308
Target:  5'- cGCaCACCG-CGGCGgcGGccgccccGGCGCCg -3'
miRNA:   3'- -CG-GUGGUaGUCGCuuCUuau----UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 50808 0.66 0.999648
Target:  5'- cGCCGCCAugacgggcUCcGCGcGGcuu-GGCGCCg -3'
miRNA:   3'- -CGGUGGU--------AGuCGCuUCuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 51030 0.67 0.998949
Target:  5'- cGCCACC--CGGCGcuGuuccuggAGGCGCCu -3'
miRNA:   3'- -CGGUGGuaGUCGCuuCuua----UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 51356 0.66 0.999648
Target:  5'- cGCUggGCUGUcCGGCGcGGAGUAcGCGCa -3'
miRNA:   3'- -CGG--UGGUA-GUCGCuUCUUAUuUGCGg -5'
23847 5' -47.6 NC_005261.1 + 51712 0.7 0.986057
Target:  5'- uCCACCAgCuGCGggGggUcguGCGCa -3'
miRNA:   3'- cGGUGGUaGuCGCuuCuuAuu-UGCGg -5'
23847 5' -47.6 NC_005261.1 + 51839 0.68 0.996795
Target:  5'- -gCACCAcCGGCGcAAGGGc-AGCGCCu -3'
miRNA:   3'- cgGUGGUaGUCGC-UUCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 52590 0.68 0.998119
Target:  5'- aCCACCAcaggcguggcgaUCAGCaGAacGGGGacGGCGCCu -3'
miRNA:   3'- cGGUGGU------------AGUCG-CU--UCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 52980 0.68 0.998119
Target:  5'- cGgCGCCGgcaGGCGggGGc--GGCGCCc -3'
miRNA:   3'- -CgGUGGUag-UCGCuuCUuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 53125 0.68 0.996211
Target:  5'- cGCCGCCAaCAGgGcGGcGUAcgcgcGCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCgCuUCuUAUu----UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 53160 0.76 0.853794
Target:  5'- cGCCGCCGUCGuCGggGuc-GAACGCg -3'
miRNA:   3'- -CGGUGGUAGUcGCuuCuuaUUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 53437 0.68 0.997742
Target:  5'- cGCCAgcCCGUCgGGCGucGGGAggu-CGCCg -3'
miRNA:   3'- -CGGU--GGUAG-UCGCu-UCUUauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 54764 0.77 0.800135
Target:  5'- cGCCGCCAgugCGGCGGgcgacaGGAcgGcGCGCCc -3'
miRNA:   3'- -CGGUGGUa--GUCGCU------UCUuaUuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 55166 0.68 0.997303
Target:  5'- cGCCGCCGcCGGCGGcucgcggggcGGAuc-GGCGCa -3'
miRNA:   3'- -CGGUGGUaGUCGCU----------UCUuauUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 55252 0.72 0.958366
Target:  5'- aGCCGCC----GCGAGGAGgucuGCGCCc -3'
miRNA:   3'- -CGGUGGuaguCGCUUCUUauu-UGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.