miRNA display CGI


Results 141 - 160 of 379 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 55814 0.73 0.935551
Target:  5'- cGCCGCCGUaaaGGCGugu-AUAAAgGCCg -3'
miRNA:   3'- -CGGUGGUAg--UCGCuucuUAUUUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 55981 0.71 0.980871
Target:  5'- cGCCGCCGUCgccaucggcaaccgcGGCGggGGcgGgggcggggaaGACGCa -3'
miRNA:   3'- -CGGUGGUAG---------------UCGCuuCUuaU----------UUGCGg -5'
23847 5' -47.6 NC_005261.1 + 57383 0.69 0.992943
Target:  5'- cCCGCCAgCAGCucGggGAGc--GCGCCc -3'
miRNA:   3'- cGGUGGUaGUCG--CuuCUUauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 57709 0.71 0.984208
Target:  5'- gGCCucguCCAUCuGCacGAGGuagAGGCGCCg -3'
miRNA:   3'- -CGGu---GGUAGuCG--CUUCuuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 57995 0.67 0.998949
Target:  5'- cGCCGCCAaaaAGCGccAGGAcGUGGAagUGCCg -3'
miRNA:   3'- -CGGUGGUag-UCGC--UUCU-UAUUU--GCGG- -5'
23847 5' -47.6 NC_005261.1 + 58225 0.66 0.999742
Target:  5'- aGCgCGCCcgCGGCGgcGGGguccucggccaugccGCGCCg -3'
miRNA:   3'- -CG-GUGGuaGUCGCuuCUUauu------------UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 58650 0.68 0.997742
Target:  5'- cCCGCCAgCAGC-AAGAAgcaGGCGCg -3'
miRNA:   3'- cGGUGGUaGUCGcUUCUUau-UUGCGg -5'
23847 5' -47.6 NC_005261.1 + 58690 0.71 0.97996
Target:  5'- gGCCcggGCCGUCAGgGcgcgccgcuGAGAGgu-GCGCCa -3'
miRNA:   3'- -CGG---UGGUAGUCgC---------UUCUUauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 59042 0.66 0.999503
Target:  5'- uGCCGCCGcgcgagcUCAGCGcgcgcggccgcgGAGAGcgcgcgcggguGCGCCg -3'
miRNA:   3'- -CGGUGGU-------AGUCGC------------UUCUUauu--------UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 59231 0.74 0.93019
Target:  5'- uGCCGCCGggccacgAGCG-AGAGcGGGCGCCg -3'
miRNA:   3'- -CGGUGGUag-----UCGCuUCUUaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 59350 0.72 0.965698
Target:  5'- cGCCGCCGUCGccaCGAGGGugu--CGCCc -3'
miRNA:   3'- -CGGUGGUAGUc--GCUUCUuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 59458 0.72 0.969
Target:  5'- cGCgGCCG-CGGCGucgGGGGgcAGCGCCg -3'
miRNA:   3'- -CGgUGGUaGUCGCu--UCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 59491 0.68 0.998119
Target:  5'- gGCCGCCGcgcCAGCGgcGGcgGucgcacgcGCGCCc -3'
miRNA:   3'- -CGGUGGUa--GUCGCuuCUuaUu-------UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 59542 0.66 0.999535
Target:  5'- cGCCACCGcgcgcgggcuucuaaUCGGCGcgcgcgc-GCGCCg -3'
miRNA:   3'- -CGGUGGU---------------AGUCGCuucuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 59599 0.84 0.464713
Target:  5'- cGCCACCAccuccgCGGCGcggcGGAUGAGCGCCa -3'
miRNA:   3'- -CGGUGGUa-----GUCGCuu--CUUAUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 59950 0.66 0.999491
Target:  5'- aGCCGCagcgCGGCGcgcgugaacgggucgAAGAA--GGCGCCg -3'
miRNA:   3'- -CGGUGgua-GUCGC---------------UUCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 60035 0.77 0.831435
Target:  5'- cGCCGCCGUCggcgccgacggcggcGGCGAAGAGc-GGCgGCCg -3'
miRNA:   3'- -CGGUGGUAG---------------UCGCUUCUUauUUG-CGG- -5'
23847 5' -47.6 NC_005261.1 + 60188 0.7 0.989253
Target:  5'- -gCGCCG-CGGCGGAGAAguccGCGCg -3'
miRNA:   3'- cgGUGGUaGUCGCUUCUUauu-UGCGg -5'
23847 5' -47.6 NC_005261.1 + 60240 0.69 0.993918
Target:  5'- gGCCGCCuccgccgCGGCGGGagcggcggccguGAAgAGGCGCCc -3'
miRNA:   3'- -CGGUGGua-----GUCGCUU------------CUUaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 60363 0.68 0.998012
Target:  5'- cGCCAggcagugcuuggucUCGUUGGCGAGGu----GCGCCu -3'
miRNA:   3'- -CGGU--------------GGUAGUCGCUUCuuauuUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.