miRNA display CGI


Results 41 - 60 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 119649 0.67 0.998949
Target:  5'- cGCCACCggCGGCGc-------GCGCCu -3'
miRNA:   3'- -CGGUGGuaGUCGCuucuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 119156 0.67 0.998949
Target:  5'- uCCGCCcgCGcGCGA-GAGUuuuuCGCCg -3'
miRNA:   3'- cGGUGGuaGU-CGCUuCUUAuuu-GCGG- -5'
23847 5' -47.6 NC_005261.1 + 118839 0.69 0.993918
Target:  5'- uGCCGCUcugCGGCGcGGAGggcggcGCGCCc -3'
miRNA:   3'- -CGGUGGua-GUCGCuUCUUauu---UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 118592 0.67 0.999145
Target:  5'- cGCCGCCG-CcGCGGAGcuc--GCGCUg -3'
miRNA:   3'- -CGGUGGUaGuCGCUUCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 118513 0.66 0.999729
Target:  5'- cGCCGC--UCGGCGAGGcgcccugcccCGCCg -3'
miRNA:   3'- -CGGUGguAGUCGCUUCuuauuu----GCGG- -5'
23847 5' -47.6 NC_005261.1 + 118445 0.7 0.987735
Target:  5'- cGCCGCCG-CGGCGcuAGAAgacacuUGCCa -3'
miRNA:   3'- -CGGUGGUaGUCGCu-UCUUauuu--GCGG- -5'
23847 5' -47.6 NC_005261.1 + 117683 0.68 0.998119
Target:  5'- gGCCggGCCcgCGGCGAGGccggcccuGAgGCCg -3'
miRNA:   3'- -CGG--UGGuaGUCGCUUCuuau----UUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 117520 0.66 0.999702
Target:  5'- cGCCACgAUgAGCGuguccaccgcGGCGCCg -3'
miRNA:   3'- -CGGUGgUAgUCGCuucuuau---UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 116513 0.71 0.984208
Target:  5'- cGCCGCCG-CGGCGGcgcGAGgcc-CGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUu--CUUauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 116141 0.67 0.998717
Target:  5'- uCCGCag-CAGCGAgaGGAAgcAGCGCg -3'
miRNA:   3'- cGGUGguaGUCGCU--UCUUauUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 116093 0.68 0.997108
Target:  5'- uGCCGCgGUCcGCGAcGAAgaucggguaguagGAGCGCUu -3'
miRNA:   3'- -CGGUGgUAGuCGCUuCUUa------------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 116021 0.71 0.982179
Target:  5'- aGCCGCCGaCGGCGcgcauGGUcuGCGCCa -3'
miRNA:   3'- -CGGUGGUaGUCGCuuc--UUAuuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 115907 0.67 0.998717
Target:  5'- cGCCGUCGUCAGCGccGGc----CGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCUuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 115635 0.73 0.945467
Target:  5'- aGCgCAgCGUCGG-GggGAAgagGGGCGCCg -3'
miRNA:   3'- -CG-GUgGUAGUCgCuuCUUa--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 115091 0.67 0.998949
Target:  5'- aGCC-CCAUCAGCGugucGGccucggcGGCGCUg -3'
miRNA:   3'- -CGGuGGUAGUCGCu---UCuuau---UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 114551 0.74 0.918658
Target:  5'- aCUACC-UCGGCGggGAGcGGcCGCCg -3'
miRNA:   3'- cGGUGGuAGUCGCuuCUUaUUuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 113883 0.7 0.987735
Target:  5'- uGCCACCuguagCGGCGAcgcggcGGGcgcGAugGCCg -3'
miRNA:   3'- -CGGUGGua---GUCGCU------UCUua-UUugCGG- -5'
23847 5' -47.6 NC_005261.1 + 113457 0.67 0.999145
Target:  5'- gGUCACgAUgAGCGgcGAGcugcuGCGCCc -3'
miRNA:   3'- -CGGUGgUAgUCGCuuCUUauu--UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 113190 0.66 0.999444
Target:  5'- gGCCACCAgcgccacgcUguGCGAGuacGGcUGcGCGCCg -3'
miRNA:   3'- -CGGUGGU---------AguCGCUU---CUuAUuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 113134 0.68 0.997742
Target:  5'- cCCGCCGcgCGGCGGcugaacguggAGAucgccGAGCGCCu -3'
miRNA:   3'- cGGUGGUa-GUCGCU----------UCUua---UUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.