miRNA display CGI


Results 61 - 80 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 112986 0.66 0.999556
Target:  5'- cGCCGCCAUCuuCGuc-----AACGCCa -3'
miRNA:   3'- -CGGUGGUAGucGCuucuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 112562 0.66 0.999748
Target:  5'- cGCUACC-UCGccuaccucgagggcuGCGAGGGcgucguGUGGACGCUc -3'
miRNA:   3'- -CGGUGGuAGU---------------CGCUUCU------UAUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 112393 0.74 0.912488
Target:  5'- gGCCAUCAaCAGCGAcAGc--GAGCGCCc -3'
miRNA:   3'- -CGGUGGUaGUCGCU-UCuuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 112072 0.75 0.885158
Target:  5'- uGCCcUCGUCGGCGAGG-----GCGCCa -3'
miRNA:   3'- -CGGuGGUAGUCGCUUCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 111316 0.67 0.998815
Target:  5'- cGCCGCCGcCGcGCGcucgguuucaaaagaAAGAGccGGCGCCg -3'
miRNA:   3'- -CGGUGGUaGU-CGC---------------UUCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 110947 0.67 0.998691
Target:  5'- cGCCGCCcggCGGCccacccgGGAGAgcugcAUGuACGCCg -3'
miRNA:   3'- -CGGUGGua-GUCG-------CUUCU-----UAUuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 109072 0.65 0.999766
Target:  5'- cGgCGCC-UCGGCGAucaugccguuggccAGGucccGGACGCCg -3'
miRNA:   3'- -CgGUGGuAGUCGCU--------------UCUua--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 108715 0.7 0.985521
Target:  5'- -gCGCCA-CGGCGAAGAGcGcgcgggccagcggcGGCGCCg -3'
miRNA:   3'- cgGUGGUaGUCGCUUCUUaU--------------UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 108448 0.71 0.97996
Target:  5'- gGCCGagcagcgcgUCGUCGGCGAGGAucuccGCGUCg -3'
miRNA:   3'- -CGGU---------GGUAGUCGCUUCUuauu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 107688 0.77 0.790533
Target:  5'- uGCCGCCG-CGGCGggG-----GCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 107544 0.66 0.999595
Target:  5'- gGCCACCAgcacgUCcgagagcacggcagcGGCGAAGua-GGGCGCg -3'
miRNA:   3'- -CGGUGGU-----AG---------------UCGCUUCuuaUUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 107481 0.68 0.996795
Target:  5'- cGCCcacGCgAUCAGCGGcAGcagcuGCGCCa -3'
miRNA:   3'- -CGG---UGgUAGUCGCU-UCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 107121 0.68 0.997742
Target:  5'- cGCCACCGcgcCGGCGAc-----GGCGCCc -3'
miRNA:   3'- -CGGUGGUa--GUCGCUucuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 106988 0.67 0.998717
Target:  5'- cGCgCACCgcGUCGGCcAGGuccgccGAGCGCCa -3'
miRNA:   3'- -CG-GUGG--UAGUCGcUUCuua---UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 106585 0.68 0.996795
Target:  5'- gGCCGCCGcgCGGCGcuccuccuGGAccucGUcccAGACGCCg -3'
miRNA:   3'- -CGGUGGUa-GUCGCu-------UCU----UA---UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 106392 0.72 0.963601
Target:  5'- cGCCGCUGUCGGCGAcauccgcgcGGCGCUg -3'
miRNA:   3'- -CGGUGGUAGUCGCUucuuau---UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 106273 0.67 0.999108
Target:  5'- uGCCGCCGggCGGCccgugc-AAACGCCg -3'
miRNA:   3'- -CGGUGGUa-GUCGcuucuuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 106007 0.71 0.97996
Target:  5'- aGCCGCagaaacgaCAGCGAGGAccgGAggcACGCCa -3'
miRNA:   3'- -CGGUGgua-----GUCGCUUCUua-UU---UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 104694 0.67 0.998949
Target:  5'- gGCCACCG-CccCGAAGAGcggcUGGACgGCCg -3'
miRNA:   3'- -CGGUGGUaGucGCUUCUU----AUUUG-CGG- -5'
23847 5' -47.6 NC_005261.1 + 104538 0.68 0.998119
Target:  5'- cGCCACCAggcgCAGCuuGGcGUc--CGCCa -3'
miRNA:   3'- -CGGUGGUa---GUCGcuUCuUAuuuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.