miRNA display CGI


Results 81 - 100 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 104453 0.68 0.998119
Target:  5'- cGCCGCCGcCGGCG--------GCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuucuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 104377 0.72 0.965698
Target:  5'- aGCCGCCGgccggaGGCcGAGAGgc-GCGCCa -3'
miRNA:   3'- -CGGUGGUag----UCGcUUCUUauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 104228 0.69 0.993918
Target:  5'- cGCgCACCGUgcccucCAGCGccAGAAUuucgcgcgcGAGCGCCg -3'
miRNA:   3'- -CG-GUGGUA------GUCGCu-UCUUA---------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 103917 0.67 0.998717
Target:  5'- cGCCGCCAggucgggcgCGGCGucugccAGACGCUg -3'
miRNA:   3'- -CGGUGGUa--------GUCGCuucuuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 103861 0.75 0.892381
Target:  5'- aGCCGCgG-CGGCGgcGGGgcGGCGCCg -3'
miRNA:   3'- -CGGUGgUaGUCGCuuCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 103821 0.75 0.906049
Target:  5'- cGCCGCCAgCAgcucGCGGAGGAgcu-CGCCc -3'
miRNA:   3'- -CGGUGGUaGU----CGCUUCUUauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 103597 0.69 0.995543
Target:  5'- cGCCGCCGUggccgcggcggCAGCGcGGGAGgcGGCGgCg -3'
miRNA:   3'- -CGGUGGUA-----------GUCGC-UUCUUauUUGCgG- -5'
23847 5' -47.6 NC_005261.1 + 102943 0.76 0.861993
Target:  5'- cGCCGCCGcugCGGCGgcGGccgcGGGCGCCg -3'
miRNA:   3'- -CGGUGGUa--GUCGCuuCUua--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 102450 0.68 0.998119
Target:  5'- cGCCGCCcggccUCGGCGcgc---AGGCGCCg -3'
miRNA:   3'- -CGGUGGu----AGUCGCuucuuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 102336 0.68 0.996211
Target:  5'- aGCCgcGCCAgcUCGGCcgcgucGAAGGcgGAGCGCg -3'
miRNA:   3'- -CGG--UGGU--AGUCG------CUUCUuaUUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 101790 0.66 0.999444
Target:  5'- uGCCGCC--CGGCGggGcu---GCGCa -3'
miRNA:   3'- -CGGUGGuaGUCGCuuCuuauuUGCGg -5'
23847 5' -47.6 NC_005261.1 + 101550 0.68 0.998119
Target:  5'- gGCCGCCAcgaccUCGcCGAGGAu---GCGCUc -3'
miRNA:   3'- -CGGUGGU-----AGUcGCUUCUuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 101469 0.7 0.987735
Target:  5'- cGCCGCCggCGGCGgcGugau-GCGCa -3'
miRNA:   3'- -CGGUGGuaGUCGCuuCuuauuUGCGg -5'
23847 5' -47.6 NC_005261.1 + 101433 0.69 0.995543
Target:  5'- gGCCGCCGaggCGGCGcGGucc-AGCGCUg -3'
miRNA:   3'- -CGGUGGUa--GUCGCuUCuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 101397 0.68 0.997742
Target:  5'- gGCCGCCAgcagCAGCGccGcuu--GCGUCa -3'
miRNA:   3'- -CGGUGGUa---GUCGCuuCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 101306 0.7 0.989253
Target:  5'- uGCgCGCCGUUAGCGGGugcGAGUcgaugauaGAGCGCg -3'
miRNA:   3'- -CG-GUGGUAGUCGCUU---CUUA--------UUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 101218 0.76 0.861993
Target:  5'- uGCCGCCG-CAGCGcgucGAGGu--GGCGCCu -3'
miRNA:   3'- -CGGUGGUaGUCGC----UUCUuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 101163 0.69 0.994781
Target:  5'- cGCCGCC----GCGAAGAGcucccacGCGCCg -3'
miRNA:   3'- -CGGUGGuaguCGCUUCUUauu----UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 101091 0.67 0.998949
Target:  5'- gGCCGCCugCAGCGcGGccgcgcGCGCCu -3'
miRNA:   3'- -CGGUGGuaGUCGCuUCuuauu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 101008 0.69 0.991847
Target:  5'- aGCCGCgCGUcCAGCGcgccuGUGAACGCg -3'
miRNA:   3'- -CGGUG-GUA-GUCGCuucu-UAUUUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.