miRNA display CGI


Results 101 - 120 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 100502 0.66 0.999546
Target:  5'- gGCgUGCCGUCGGCGuccaGGUAGccgcgcgGCGCCa -3'
miRNA:   3'- -CG-GUGGUAGUCGCuuc-UUAUU-------UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 100398 0.81 0.589837
Target:  5'- cGCCGCCGUugucCAGCGggGGGcgcaucgAGGCGCCc -3'
miRNA:   3'- -CGGUGGUA----GUCGCuuCUUa------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 99876 0.77 0.818812
Target:  5'- cGCCGCCGcUCGGCGcGAGGGcguUGAcCGCCa -3'
miRNA:   3'- -CGGUGGU-AGUCGC-UUCUU---AUUuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 99747 0.7 0.99049
Target:  5'- uGCCGCCAcacggccagcacgUCGGaCGggGAG-AGGCgGCCc -3'
miRNA:   3'- -CGGUGGU-------------AGUC-GCuuCUUaUUUG-CGG- -5'
23847 5' -47.6 NC_005261.1 + 99672 0.71 0.974914
Target:  5'- aCCGUCGUCAGCGcgcugcccGGGAUGAggcGCGCCa -3'
miRNA:   3'- cGGUGGUAGUCGCu-------UCUUAUU---UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 99112 0.67 0.998612
Target:  5'- uGCuCGCgAUCAGCGccGAGAGcugcuccagcuGCGCCg -3'
miRNA:   3'- -CG-GUGgUAGUCGC--UUCUUauu--------UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 98857 0.72 0.969
Target:  5'- cGCCGCUugcggCGGCGAAGuccgGGACGUUg -3'
miRNA:   3'- -CGGUGGua---GUCGCUUCuua-UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 98809 0.68 0.997701
Target:  5'- gGUCGCCggCGGCGugccggaagacggGGGggUGGGCGUa -3'
miRNA:   3'- -CGGUGGuaGUCGC-------------UUCuuAUUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 98570 0.66 0.999546
Target:  5'- gGCgGCCGUCcuccgcgggcucgGGCGAGuAGgcGGCGCCc -3'
miRNA:   3'- -CGgUGGUAG-------------UCGCUUcUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 98319 0.75 0.899346
Target:  5'- cGCCGCCGcCAGCGgcGGc---GCGCCc -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCUuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 98187 0.75 0.877682
Target:  5'- aGCCGCCGggggcgCGGCGGGcAGcGGGCGCCg -3'
miRNA:   3'- -CGGUGGUa-----GUCGCUUcUUaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 98142 0.67 0.998442
Target:  5'- gGCgGCCGUCGGCGGcaAGGccgcGGGCGgCg -3'
miRNA:   3'- -CGgUGGUAGUCGCU--UCUua--UUUGCgG- -5'
23847 5' -47.6 NC_005261.1 + 98106 0.71 0.974914
Target:  5'- cGCgGCgGgCGGCGAGGcuggGGACGCCg -3'
miRNA:   3'- -CGgUGgUaGUCGCUUCuua-UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 98013 0.73 0.954325
Target:  5'- gGgCGCUggCGGCGAGGcuggAGACGCCg -3'
miRNA:   3'- -CgGUGGuaGUCGCUUCuua-UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 97938 0.67 0.998949
Target:  5'- gGCCGCCAgcucCGGCGGcaacgaGGGAgguGGCGgCg -3'
miRNA:   3'- -CGGUGGUa---GUCGCU------UCUUau-UUGCgG- -5'
23847 5' -47.6 NC_005261.1 + 97890 0.68 0.996795
Target:  5'- aGCC-CCGggcCGGCGGAccGucUGGGCGCCg -3'
miRNA:   3'- -CGGuGGUa--GUCGCUU--CuuAUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 97694 0.71 0.97996
Target:  5'- gGCUGCCGgggCGGUGggGAGacggcgGGugGCCc -3'
miRNA:   3'- -CGGUGGUa--GUCGCuuCUUa-----UUugCGG- -5'
23847 5' -47.6 NC_005261.1 + 97474 0.74 0.912488
Target:  5'- cGCCaaaACCGUCGGgGggGcccuuggGGGCGCCg -3'
miRNA:   3'- -CGG---UGGUAGUCgCuuCuua----UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 96943 0.67 0.998949
Target:  5'- cGCCcacggGCgCAUCGGCGggGcagc--CGCCg -3'
miRNA:   3'- -CGG-----UG-GUAGUCGCuuCuuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 95756 0.68 0.995955
Target:  5'- cGCCGCCGggGGCGccGGGAGccucgcgcgcuGCGCCg -3'
miRNA:   3'- -CGGUGGUagUCGC--UUCUUauu--------UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.