miRNA display CGI


Results 121 - 140 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 95405 0.77 0.818812
Target:  5'- gGCCAUCA-CGGCGGAGcaGAacAACGCCa -3'
miRNA:   3'- -CGGUGGUaGUCGCUUC--UUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 95164 0.69 0.995543
Target:  5'- aCCugCAgugCGGCGAGGGggAcgUGCCc -3'
miRNA:   3'- cGGugGUa--GUCGCUUCUuaUuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 95085 0.67 0.998717
Target:  5'- cGCgACCGcgaCGGCGAGGcc--GAUGCCg -3'
miRNA:   3'- -CGgUGGUa--GUCGCUUCuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 95027 0.75 0.899346
Target:  5'- aGCCGCCGcCGGCGgcGcuc-GGCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 94906 0.71 0.982179
Target:  5'- cGCgCGCUggaGGCGAGGAAgGAGCGCUu -3'
miRNA:   3'- -CG-GUGGuagUCGCUUCUUaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 94721 0.74 0.912488
Target:  5'- cGCCGCUAccUCcggGGCGggGAcaccGACGCCg -3'
miRNA:   3'- -CGGUGGU--AG---UCGCuuCUuau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 94623 0.67 0.998949
Target:  5'- cGCCGCCGcCGGCGccGucGUcgGCGCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCu-UAuuUGCGg -5'
23847 5' -47.6 NC_005261.1 + 94145 0.7 0.987735
Target:  5'- uCCACCAgcgUCAGCGcccGggUcgcgaAGGCGCCc -3'
miRNA:   3'- cGGUGGU---AGUCGCuu-CuuA-----UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 94095 0.68 0.997742
Target:  5'- cGCCGCCGUCcGUGcGGAAgcacACGUg -3'
miRNA:   3'- -CGGUGGUAGuCGCuUCUUauu-UGCGg -5'
23847 5' -47.6 NC_005261.1 + 93949 0.67 0.998949
Target:  5'- cGCCGCC-UCcgGGCGGucGGccGUcGACGCCa -3'
miRNA:   3'- -CGGUGGuAG--UCGCUu-CU--UAuUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 93822 0.68 0.998119
Target:  5'- cGCCACCGccgCAGCcGccGGGc-GGCGCCg -3'
miRNA:   3'- -CGGUGGUa--GUCG-CuuCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 93664 0.7 0.985701
Target:  5'- cCCACCGguccgcgggcggCGGCGccGGcgGGGCGCCg -3'
miRNA:   3'- cGGUGGUa-----------GUCGCuuCUuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 93487 0.74 0.925134
Target:  5'- cGUCGCCcgCGGCGAAGcgcgcgaaccgcGGCGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCUUCuuau--------UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 92504 0.79 0.698169
Target:  5'- gGCCAgcUCGUCAGCGggGGA-GGAgGCCa -3'
miRNA:   3'- -CGGU--GGUAGUCGCuuCUUaUUUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 92426 0.72 0.969
Target:  5'- gGCCACCGUCcGCGAgaggucgaacGGGAgcaccacGGGCGUCg -3'
miRNA:   3'- -CGGUGGUAGuCGCU----------UCUUa------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 92292 0.69 0.994781
Target:  5'- uGCUGCaCGUaGGCc-AGGAUGAGCGCCg -3'
miRNA:   3'- -CGGUG-GUAgUCGcuUCUUAUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 92234 0.66 0.999556
Target:  5'- cCCGCCG--AGCGcgcGGAUGGAgGCCa -3'
miRNA:   3'- cGGUGGUagUCGCuu-CUUAUUUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 92101 0.71 0.978533
Target:  5'- cGCCcCCGUCccgcagcacgugguaGGCGAAGAAUAGcucgggcuGgGCCa -3'
miRNA:   3'- -CGGuGGUAG---------------UCGCUUCUUAUU--------UgCGG- -5'
23847 5' -47.6 NC_005261.1 + 91944 0.66 0.999556
Target:  5'- uGCCACaCGUgGGCGAcGAucuuGUAcccGGCGCa -3'
miRNA:   3'- -CGGUG-GUAgUCGCUuCU----UAU---UUGCGg -5'
23847 5' -47.6 NC_005261.1 + 91402 0.67 0.998949
Target:  5'- cGUCGCgccCGGCGAGGAcGUGgagcgcGACGCCg -3'
miRNA:   3'- -CGGUGguaGUCGCUUCU-UAU------UUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.