miRNA display CGI


Results 81 - 100 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 98319 0.75 0.899346
Target:  5'- cGCCGCCGcCAGCGgcGGc---GCGCCc -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCUuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 135027 0.75 0.899346
Target:  5'- cGCgGCCG-CGGCGgcGAGgccGACGCCu -3'
miRNA:   3'- -CGgUGGUaGUCGCuuCUUau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 103821 0.75 0.906049
Target:  5'- cGCCGCCAgCAgcucGCGGAGGAgcu-CGCCc -3'
miRNA:   3'- -CGGUGGUaGU----CGCUUCUUauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 131662 0.75 0.906049
Target:  5'- gGCgCACCGUCuGCGAGGGugcGAcCGCCc -3'
miRNA:   3'- -CG-GUGGUAGuCGCUUCUua-UUuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 81331 0.74 0.910584
Target:  5'- cGCCgucgucgggGCCGUCGGCGggGcgggggcuugcgggGGGCGCCg -3'
miRNA:   3'- -CGG---------UGGUAGUCGCuuCuua-----------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 94721 0.74 0.912488
Target:  5'- cGCCGCUAccUCcggGGCGggGAcaccGACGCCg -3'
miRNA:   3'- -CGGUGGU--AG---UCGCuuCUuau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 112393 0.74 0.912488
Target:  5'- gGCCAUCAaCAGCGAcAGc--GAGCGCCc -3'
miRNA:   3'- -CGGUGGUaGUCGCU-UCuuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 103861 0.75 0.892381
Target:  5'- aGCCGCgG-CGGCGgcGGGgcGGCGCCg -3'
miRNA:   3'- -CGGUGgUaGUCGCuuCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 47265 0.75 0.885158
Target:  5'- cGCCGgcCCGcCGGCGAAGA----GCGCCg -3'
miRNA:   3'- -CGGU--GGUaGUCGCUUCUuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 112072 0.75 0.885158
Target:  5'- uGCCcUCGUCGGCGAGG-----GCGCCa -3'
miRNA:   3'- -CGGuGGUAGUCGCUUCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 133158 0.76 0.845368
Target:  5'- cGCCGCCGUCGGCGucGc-----CGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCuuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 15149 0.76 0.845368
Target:  5'- cCCGCCGUCcGCGGugGGggUGGGCGUa -3'
miRNA:   3'- cGGUGGUAGuCGCU--UCuuAUUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 43426 0.76 0.853794
Target:  5'- uCCGCCGcCGGCGggGAGcUGgcucGGCGCCu -3'
miRNA:   3'- cGGUGGUaGUCGCuuCUU-AU----UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 53160 0.76 0.853794
Target:  5'- cGCCGCCGUCGuCGggGuc-GAACGCg -3'
miRNA:   3'- -CGGUGGUAGUcGCuuCuuaUUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 13346 0.76 0.861993
Target:  5'- gGCCAgCgGUCGGCGGAGGcUGGGCGgCa -3'
miRNA:   3'- -CGGU-GgUAGUCGCUUCUuAUUUGCgG- -5'
23847 5' -47.6 NC_005261.1 + 101218 0.76 0.861993
Target:  5'- uGCCGCCG-CAGCGcgucGAGGu--GGCGCCu -3'
miRNA:   3'- -CGGUGGUaGUCGC----UUCUuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 102943 0.76 0.861993
Target:  5'- cGCCGCCGcugCGGCGgcGGccgcGGGCGCCg -3'
miRNA:   3'- -CGGUGGUa--GUCGCuuCUua--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 64004 0.76 0.869958
Target:  5'- aGCCGcCCAUCAGCGcguAG-GUGAGCGUg -3'
miRNA:   3'- -CGGU-GGUAGUCGCu--UCuUAUUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 98187 0.75 0.877682
Target:  5'- aGCCGCCGggggcgCGGCGGGcAGcGGGCGCCg -3'
miRNA:   3'- -CGGUGGUa-----GUCGCUUcUUaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 19543 0.75 0.885158
Target:  5'- cGUCACCGcCAGCGccGugggGAGCGCCa -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCuua-UUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.