miRNA display CGI


Results 121 - 140 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 44034 0.73 0.951777
Target:  5'- gGCCGCCGcgCGGCGGccgcgggcgggcagcAGAuccaGGACGCCu -3'
miRNA:   3'- -CGGUGGUa-GUCGCU---------------UCUua--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 39365 0.73 0.954325
Target:  5'- aGCCGCCucAUCGGCGGccGGGGaGGGCgGCCc -3'
miRNA:   3'- -CGGUGG--UAGUCGCU--UCUUaUUUG-CGG- -5'
23847 5' -47.6 NC_005261.1 + 42923 0.74 0.918658
Target:  5'- gGCCGCCG--GGCGAGuGggUGcggauccacccGACGCCg -3'
miRNA:   3'- -CGGUGGUagUCGCUU-CuuAU-----------UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 114551 0.74 0.918658
Target:  5'- aCUACC-UCGGCGggGAGcGGcCGCCg -3'
miRNA:   3'- cGGUGGuAGUCGCuuCUUaUUuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 121831 0.74 0.912488
Target:  5'- gGCCGCCG-CGGCGgcGcaccGGCGCCa -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 112072 0.75 0.885158
Target:  5'- uGCCcUCGUCGGCGAGG-----GCGCCa -3'
miRNA:   3'- -CGGuGGUAGUCGCUUCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 47265 0.75 0.885158
Target:  5'- cGCCGgcCCGcCGGCGAAGA----GCGCCg -3'
miRNA:   3'- -CGGU--GGUaGUCGCUUCUuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 103861 0.75 0.892381
Target:  5'- aGCCGCgG-CGGCGgcGGGgcGGCGCCg -3'
miRNA:   3'- -CGGUGgUaGUCGCuuCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 135130 0.75 0.892381
Target:  5'- uCCGCagcgCGGCGggGGAgacGACGCCg -3'
miRNA:   3'- cGGUGgua-GUCGCuuCUUau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 62620 0.75 0.899346
Target:  5'- gGCgGCCAUCAGCGccAGcGUGuccggcgcGACGCCg -3'
miRNA:   3'- -CGgUGGUAGUCGCu-UCuUAU--------UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 95027 0.75 0.899346
Target:  5'- aGCCGCCGcCGGCGgcGcuc-GGCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 98319 0.75 0.899346
Target:  5'- cGCCGCCGcCAGCGgcGGc---GCGCCc -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCUuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 135027 0.75 0.899346
Target:  5'- cGCgGCCG-CGGCGgcGAGgccGACGCCu -3'
miRNA:   3'- -CGgUGGUaGUCGCuuCUUau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 103821 0.75 0.906049
Target:  5'- cGCCGCCAgCAgcucGCGGAGGAgcu-CGCCc -3'
miRNA:   3'- -CGGUGGUaGU----CGCUUCUUauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 131662 0.75 0.906049
Target:  5'- gGCgCACCGUCuGCGAGGGugcGAcCGCCc -3'
miRNA:   3'- -CG-GUGGUAGuCGCUUCUua-UUuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 81331 0.74 0.910584
Target:  5'- cGCCgucgucgggGCCGUCGGCGggGcgggggcuugcgggGGGCGCCg -3'
miRNA:   3'- -CGG---------UGGUAGUCGCuuCuua-----------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 94721 0.74 0.912488
Target:  5'- cGCCGCUAccUCcggGGCGggGAcaccGACGCCg -3'
miRNA:   3'- -CGGUGGU--AG---UCGCuuCUuau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 112393 0.74 0.912488
Target:  5'- gGCCAUCAaCAGCGAcAGc--GAGCGCCc -3'
miRNA:   3'- -CGGUGGUaGUCGCU-UCuuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 47150 0.74 0.912488
Target:  5'- cGCCGgCGUCGGCGGccgAGAccaccagcgGGACGCCc -3'
miRNA:   3'- -CGGUgGUAGUCGCU---UCUua-------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 97474 0.74 0.912488
Target:  5'- cGCCaaaACCGUCGGgGggGcccuuggGGGCGCCg -3'
miRNA:   3'- -CGG---UGGUAGUCgCuuCuua----UUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.