miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23848 5' -66.3 NC_005261.1 + 39795 0.66 0.404901
Target:  5'- gGGGGCgGCgCGGCC-GCCgGCGCCaGGc -3'
miRNA:   3'- -CUCCG-CG-GCCGGaCGGaCGUGGgCCa -5'
23848 5' -66.3 NC_005261.1 + 72836 0.66 0.404901
Target:  5'- aAGGCgGUCGGCCagggcGCCaGCGCCCaGGc -3'
miRNA:   3'- cUCCG-CGGCCGGa----CGGaCGUGGG-CCa -5'
23848 5' -66.3 NC_005261.1 + 35719 0.66 0.404901
Target:  5'- -cGGUGgCGGCCccgGCCgagGCcACCUGGg -3'
miRNA:   3'- cuCCGCgGCCGGa--CGGa--CG-UGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 113288 0.66 0.404901
Target:  5'- aGGGCGUgGuccucucgcuGCCgcggGCCUGgGCCCGGc -3'
miRNA:   3'- cUCCGCGgC----------CGGa---CGGACgUGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 68244 0.66 0.402452
Target:  5'- gGGGGCGUguucguggacugccUGGCgC-GCCUGCGCCCGc- -3'
miRNA:   3'- -CUCCGCG--------------GCCG-GaCGGACGUGGGCca -5'
23848 5' -66.3 NC_005261.1 + 4465 0.66 0.396774
Target:  5'- -cGGCGgCGGCCcGUCgcgcgGCGCCgCGGc -3'
miRNA:   3'- cuCCGCgGCCGGaCGGa----CGUGG-GCCa -5'
23848 5' -66.3 NC_005261.1 + 100426 0.66 0.396774
Target:  5'- cGAGGCGCCcGCCUGCgaGUACagCGc- -3'
miRNA:   3'- -CUCCGCGGcCGGACGgaCGUGg-GCca -5'
23848 5' -66.3 NC_005261.1 + 77569 0.66 0.388754
Target:  5'- -uGGCGCC-GCCgcGCCcugGCAcCCCGGg -3'
miRNA:   3'- cuCCGCGGcCGGa-CGGa--CGU-GGGCCa -5'
23848 5' -66.3 NC_005261.1 + 6447 0.66 0.388754
Target:  5'- nGGGGCcgGCCGGgCUGCCcGCAcacCCCGc- -3'
miRNA:   3'- -CUCCG--CGGCCgGACGGaCGU---GGGCca -5'
23848 5' -66.3 NC_005261.1 + 53239 0.66 0.388754
Target:  5'- -cGGCGCCaGCUcGCCccgcGCGuCCCGGUc -3'
miRNA:   3'- cuCCGCGGcCGGaCGGa---CGU-GGGCCA- -5'
23848 5' -66.3 NC_005261.1 + 6419 0.66 0.387957
Target:  5'- -uGGC-CCGGCCUGCUcGCGagggcggUCCGGg -3'
miRNA:   3'- cuCCGcGGCCGGACGGaCGU-------GGGCCa -5'
23848 5' -66.3 NC_005261.1 + 102954 0.66 0.38084
Target:  5'- -cGGCGgCGGCC-GCggGCGCCgCGGg -3'
miRNA:   3'- cuCCGCgGCCGGaCGgaCGUGG-GCCa -5'
23848 5' -66.3 NC_005261.1 + 34100 0.66 0.38084
Target:  5'- aGGGGCGCCcaaCCUGCCcgcugugcaagGCGCCCGu- -3'
miRNA:   3'- -CUCCGCGGcc-GGACGGa----------CGUGGGCca -5'
23848 5' -66.3 NC_005261.1 + 53569 0.66 0.38084
Target:  5'- cAGGCGCacuagCGGCCgcggGCCggcgGCGCCCcagcGGa -3'
miRNA:   3'- cUCCGCG-----GCCGGa---CGGa---CGUGGG----CCa -5'
23848 5' -66.3 NC_005261.1 + 78149 0.66 0.378487
Target:  5'- -cGGCGCCcGCCgcUGCCgGCgggccaccugaggaGCCCGGg -3'
miRNA:   3'- cuCCGCGGcCGG--ACGGaCG--------------UGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 127702 0.66 0.376143
Target:  5'- -cGGCGCCggaggagcugcgcguGGCCUGCCUgGUAgCgGGa -3'
miRNA:   3'- cuCCGCGG---------------CCGGACGGA-CGUgGgCCa -5'
23848 5' -66.3 NC_005261.1 + 3854 0.66 0.373034
Target:  5'- -cGGCGCCGGC--GCCgcGCGgCCGGc -3'
miRNA:   3'- cuCCGCGGCCGgaCGGa-CGUgGGCCa -5'
23848 5' -66.3 NC_005261.1 + 123082 0.66 0.373034
Target:  5'- aGAGGCgGCCGGCCacGCCauuuCGCCgCGGc -3'
miRNA:   3'- -CUCCG-CGGCCGGa-CGGac--GUGG-GCCa -5'
23848 5' -66.3 NC_005261.1 + 121238 0.66 0.373034
Target:  5'- -uGGCGCCGGCCaGCUccgACUCGGg -3'
miRNA:   3'- cuCCGCGGCCGGaCGGacgUGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 30722 0.66 0.373034
Target:  5'- -cGGCGCCgGGCCgccagGCCcgaGCcccagccucaGCCCGGg -3'
miRNA:   3'- cuCCGCGG-CCGGa----CGGa--CG----------UGGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.