Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 98664 | 0.66 | 0.89201 |
Target: 5'- cCCCCaGGCGAGGGCgggCUccgCCggggccggaggCGCGg -3' miRNA: 3'- aGGGG-CUGCUCUCGa--GAa--GGaa---------GCGC- -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 119650 | 0.68 | 0.771778 |
Target: 5'- gCCaCCGGCGgcgcgcgccuGGAGCUCUgguUCCagCGCGu -3' miRNA: 3'- aGG-GGCUGC----------UCUCGAGA---AGGaaGCGC- -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 3162 | 0.68 | 0.78105 |
Target: 5'- gCCCCGGCGGcGGCggccUCUUCCU-CGUc -3' miRNA: 3'- aGGGGCUGCUcUCG----AGAAGGAaGCGc -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 41111 | 0.68 | 0.78105 |
Target: 5'- gUCCgCGGCGGgcccGAGCgCUUCCUgCGUGg -3' miRNA: 3'- -AGGgGCUGCU----CUCGaGAAGGAaGCGC- -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 76873 | 0.68 | 0.789283 |
Target: 5'- -gCCCGGCGAGGaggccgacggcacGCUCUUCgCccacgUCGCGc -3' miRNA: 3'- agGGGCUGCUCU-------------CGAGAAG-Ga----AGCGC- -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 69177 | 0.68 | 0.790191 |
Target: 5'- cCCuuGACGAGGGCa---CCgUCGCGg -3' miRNA: 3'- aGGggCUGCUCUCGagaaGGaAGCGC- -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 57508 | 0.68 | 0.808039 |
Target: 5'- gUCCCGGCGGcGGGCcuUCUUCCacaggcacggCGCGg -3' miRNA: 3'- aGGGGCUGCU-CUCG--AGAAGGaa--------GCGC- -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 70099 | 0.68 | 0.808039 |
Target: 5'- aCgCCGGCGAGaAGCUCggcgCCU-CGUGc -3' miRNA: 3'- aGgGGCUGCUC-UCGAGaa--GGAaGCGC- -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 75075 | 0.67 | 0.815006 |
Target: 5'- gCgCCGGCGGGGGCUCggcgggcaucgUCUUCGgGa -3' miRNA: 3'- aGgGGCUGCUCUCGAGaa---------GGAAGCgC- -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 93696 | 0.68 | 0.771778 |
Target: 5'- gCgCCGGCGGGuGcCUCUUCCUccUCGUc -3' miRNA: 3'- aGgGGCUGCUCuC-GAGAAGGA--AGCGc -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 77796 | 0.69 | 0.762382 |
Target: 5'- aCCCCGGCGAGGGCgcgCccgCCga-GCu -3' miRNA: 3'- aGGGGCUGCUCUCGa--Gaa-GGaagCGc -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 42222 | 0.69 | 0.762382 |
Target: 5'- gCCCCGcCGcGAGCUCcgCCgcgCGCa -3' miRNA: 3'- aGGGGCuGCuCUCGAGaaGGaa-GCGc -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 106304 | 0.76 | 0.354 |
Target: 5'- aCCUCGGCGAGcAGgUCUUCCgUCGUGa -3' miRNA: 3'- aGGGGCUGCUC-UCgAGAAGGaAGCGC- -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 51600 | 0.71 | 0.622925 |
Target: 5'- cUCCUGACGcugucuGAGCUCgUCCUgUCGCGc -3' miRNA: 3'- aGGGGCUGCu-----CUCGAGaAGGA-AGCGC- -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 120085 | 0.71 | 0.63311 |
Target: 5'- aCCCCGugGAG-GCUCggCaCgcgCGCGa -3' miRNA: 3'- aGGGGCugCUCuCGAGaaG-Gaa-GCGC- -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 72442 | 0.71 | 0.643294 |
Target: 5'- cCCCCGGCGGGGGCg---CC--CGCGg -3' miRNA: 3'- aGGGGCUGCUCUCGagaaGGaaGCGC- -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 116631 | 0.7 | 0.663627 |
Target: 5'- cCCgCCGACGAGGGCgaggCCcgCGCGc -3' miRNA: 3'- aGG-GGCUGCUCUCGagaaGGaaGCGC- -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 96588 | 0.7 | 0.703923 |
Target: 5'- aCCCCGGCG-GcGCUCUgCCgcagcacgUCGCGc -3' miRNA: 3'- aGGGGCUGCuCuCGAGAaGGa-------AGCGC- -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 75956 | 0.69 | 0.712877 |
Target: 5'- gCCCCgagGugGAGgucacgcAGCUCUUCCcgggCGCGg -3' miRNA: 3'- aGGGG---CugCUC-------UCGAGAAGGaa--GCGC- -5' |
|||||||
23849 | 3' | -56.5 | NC_005261.1 | + | 660 | 0.69 | 0.762382 |
Target: 5'- gUCCCCGGCGccGAGUcCUggcCCUcCGCGg -3' miRNA: 3'- -AGGGGCUGCu-CUCGaGAa--GGAaGCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home