Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2385 | 3' | -59.5 | NC_001416.1 | + | 403 | 0.69 | 0.296606 |
Target: 5'- -gGCCAGCGa-GGCAGaUCUCCaGCCa -3' miRNA: 3'- aaUGGUCGCcgCCGUUaGGAGGcCGG- -5' |
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2385 | 3' | -59.5 | NC_001416.1 | + | 1955 | 0.68 | 0.343212 |
Target: 5'- aUACCGGCGGUcaGGUAAgCCacaCGGUCa -3' miRNA: 3'- aAUGGUCGCCG--CCGUUaGGag-GCCGG- -5' |
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2385 | 3' | -59.5 | NC_001416.1 | + | 2711 | 0.66 | 0.451291 |
Target: 5'- -cACgGGCaGCGGCAAguUCUUCCuGUCg -3' miRNA: 3'- aaUGgUCGcCGCCGUU--AGGAGGcCGG- -5' |
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2385 | 3' | -59.5 | NC_001416.1 | + | 3457 | 0.66 | 0.41317 |
Target: 5'- -cACCGGCa-CGGCAGU--UCCGGCUg -3' miRNA: 3'- aaUGGUCGccGCCGUUAggAGGCCGG- -5' |
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2385 | 3' | -59.5 | NC_001416.1 | + | 3848 | 0.68 | 0.309293 |
Target: 5'- -gACCGGCGcugcggcguaauacGCGGCAauuucaccaAUCCagCCGGUCa -3' miRNA: 3'- aaUGGUCGC--------------CGCCGU---------UAGGa-GGCCGG- -5' |
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2385 | 3' | -59.5 | NC_001416.1 | + | 5522 | 0.66 | 0.451291 |
Target: 5'- -aACC-GCuGCGGUGAUCUgcgcguucacgUCCGGCUg -3' miRNA: 3'- aaUGGuCGcCGCCGUUAGG-----------AGGCCGG- -5' |
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2385 | 3' | -59.5 | NC_001416.1 | + | 6508 | 0.66 | 0.422514 |
Target: 5'- aUGCgaCGGCGGCGGUAAgCCgggUCC-GCCa -3' miRNA: 3'- aAUG--GUCGCCGCCGUUaGG---AGGcCGG- -5' |
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2385 | 3' | -59.5 | NC_001416.1 | + | 9248 | 0.66 | 0.451291 |
Target: 5'- -cGCCAGCGugaaGCuGGUA--UCUCCGGCa -3' miRNA: 3'- aaUGGUCGC----CG-CCGUuaGGAGGCCGg -5' |
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2385 | 3' | -59.5 | NC_001416.1 | + | 10816 | 0.66 | 0.431984 |
Target: 5'- ---aCAGgGGgGGCAGgugaaggacUCCUUCGGCg -3' miRNA: 3'- aaugGUCgCCgCCGUU---------AGGAGGCCGg -5' |
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2385 | 3' | -59.5 | NC_001416.1 | + | 10911 | 0.7 | 0.242321 |
Target: 5'- -cGCUGGCGGUGGCGA-CCggugcgCUGGCg -3' miRNA: 3'- aaUGGUCGCCGCCGUUaGGa-----GGCCGg -5' |
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2385 | 3' | -59.5 | NC_001416.1 | + | 12513 | 0.67 | 0.359878 |
Target: 5'- aUUGCaCAGaauauGGCGGCGAUgCUgaCCGGCa -3' miRNA: 3'- -AAUG-GUCg----CCGCCGUUAgGA--GGCCGg -5' |
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2385 | 3' | -59.5 | NC_001416.1 | + | 16801 | 0.69 | 0.296606 |
Target: 5'- gUACCAGcCGGgGGCAGgcacaCCgcgCCGGgCu -3' miRNA: 3'- aAUGGUC-GCCgCCGUUa----GGa--GGCCgG- -5' |
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2385 | 3' | -59.5 | NC_001416.1 | + | 17680 | 0.69 | 0.296606 |
Target: 5'- cUGCCGGU-GCGGCAAUCCggaacgauaCCGacGCCg -3' miRNA: 3'- aAUGGUCGcCGCCGUUAGGa--------GGC--CGG- -5' |
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2385 | 3' | -59.5 | NC_001416.1 | + | 18298 | 1.09 | 0.000293 |
Target: 5'- aUUACCAGCGGCGGCAAUCCUCCGGCCu -3' miRNA: 3'- -AAUGGUCGCCGCCGUUAGGAGGCCGG- -5' |
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2385 | 3' | -59.5 | NC_001416.1 | + | 18976 | 0.75 | 0.104713 |
Target: 5'- uUUGCCGcacuuGCGGUGaCAGUCaCUCCGGCCc -3' miRNA: 3'- -AAUGGU-----CGCCGCcGUUAG-GAGGCCGG- -5' |
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2385 | 3' | -59.5 | NC_001416.1 | + | 20438 | 0.67 | 0.36842 |
Target: 5'- cUGCCAG-GGCGGCAaaaacGUCCgagacgaaugCCaGGUCa -3' miRNA: 3'- aAUGGUCgCCGCCGU-----UAGGa---------GG-CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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