Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2385 | 5' | -50.2 | NC_001416.1 | + | 18336 | 1.09 | 0.002703 |
Target: 5'- aCCGGACGGAAAGCUGACCGCUAAAAAu -3' miRNA: 3'- -GGCCUGCCUUUCGACUGGCGAUUUUU- -5' |
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2385 | 5' | -50.2 | NC_001416.1 | + | 1954 | 0.71 | 0.677021 |
Target: 5'- gCCGGGugaGGAAAGCUGGCUGaUUGAc-- -3' miRNA: 3'- -GGCCUg--CCUUUCGACUGGC-GAUUuuu -5' |
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2385 | 5' | -50.2 | NC_001416.1 | + | 3734 | 0.69 | 0.755436 |
Target: 5'- -aGGagcaGCGGGAaaGGCUGACCgGCUGGAu- -3' miRNA: 3'- ggCC----UGCCUU--UCGACUGG-CGAUUUuu -5' |
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2385 | 5' | -50.2 | NC_001416.1 | + | 2352 | 0.68 | 0.836486 |
Target: 5'- cCCGGAUauuuuugaucugaccGAAgcgcagcAGCUGACUGCUGAAGAg -3' miRNA: 3'- -GGCCUGc--------------CUU-------UCGACUGGCGAUUUUU- -5' |
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2385 | 5' | -50.2 | NC_001416.1 | + | 3455 | 0.68 | 0.845672 |
Target: 5'- -aGGACGGGuauccuGGCUGgauGCCGCaGAAAu -3' miRNA: 3'- ggCCUGCCUu-----UCGAC---UGGCGaUUUUu -5' |
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2385 | 5' | -50.2 | NC_001416.1 | + | 20157 | 0.66 | 0.916221 |
Target: 5'- uCCGG-CGGAcguGCUGGCgGCg----- -3' miRNA: 3'- -GGCCuGCCUuu-CGACUGgCGauuuuu -5' |
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2385 | 5' | -50.2 | NC_001416.1 | + | 4691 | 0.66 | 0.922598 |
Target: 5'- gCCGGACGcGGgcGCUGcaGCCGUa----- -3' miRNA: 3'- -GGCCUGC-CUuuCGAC--UGGCGauuuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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