Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23850 | 3' | -50.3 | NC_005261.1 | + | 81716 | 0.68 | 0.97634 |
Target: 5'- cGGUCCGCgcgcaGCAGCGgcacgCGUCcgcaGugGAAGAc -3' miRNA: 3'- -UCAGGUG-----UGUCGCa----GCAG----UugCUUUU- -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 83368 | 0.68 | 0.973634 |
Target: 5'- cGUCCACGuCGGCGagCG-CGGCGAGc- -3' miRNA: 3'- uCAGGUGU-GUCGCa-GCaGUUGCUUuu -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 13274 | 0.68 | 0.973634 |
Target: 5'- aGGUCCACGC--UGUUGUUGGCGggGc -3' miRNA: 3'- -UCAGGUGUGucGCAGCAGUUGCuuUu -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 63500 | 0.68 | 0.973634 |
Target: 5'- aGGUCCGCcgagACgGGCGUCG-CGAUGAAc- -3' miRNA: 3'- -UCAGGUG----UG-UCGCAGCaGUUGCUUuu -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 111672 | 0.68 | 0.97071 |
Target: 5'- --gCCGCggugGCGGCGUaCGUCGGCGAu-- -3' miRNA: 3'- ucaGGUG----UGUCGCA-GCAGUUGCUuuu -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 83625 | 0.68 | 0.96756 |
Target: 5'- uGGUCCAgCGCGagguccagcGCGUaCGUCAGCGGc-- -3' miRNA: 3'- -UCAGGU-GUGU---------CGCA-GCAGUUGCUuuu -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 101143 | 0.68 | 0.96756 |
Target: 5'- gAGgcugCCGCGCGGCGgcgCGcCGccGCGAAGAg -3' miRNA: 3'- -UCa---GGUGUGUCGCa--GCaGU--UGCUUUU- -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 67160 | 0.68 | 0.964178 |
Target: 5'- --cCCACGCGGCGgcggCGUCAcACGGc-- -3' miRNA: 3'- ucaGGUGUGUCGCa---GCAGU-UGCUuuu -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 123717 | 0.69 | 0.95669 |
Target: 5'- cGG-CCAUcaGCAGCGUCGUC-GCGGu-- -3' miRNA: 3'- -UCaGGUG--UGUCGCAGCAGuUGCUuuu -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 133053 | 0.69 | 0.95669 |
Target: 5'- cGUgCUGCGCGGCGUUGgCGGCGAGu- -3' miRNA: 3'- uCA-GGUGUGUCGCAGCaGUUGCUUuu -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 41840 | 0.69 | 0.95669 |
Target: 5'- -cUCCugGCAGCGcuugUUGUUAAUGAAAAu -3' miRNA: 3'- ucAGGugUGUCGC----AGCAGUUGCUUUU- -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 94143 | 0.69 | 0.952573 |
Target: 5'- cGUCCAC-CAGCGUCagcgcccggGUC-GCGAAGg -3' miRNA: 3'- uCAGGUGuGUCGCAG---------CAGuUGCUUUu -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 123814 | 0.69 | 0.9482 |
Target: 5'- gAGUCCACcgucuccacuuCGGCGUCGUgCAGCGu--- -3' miRNA: 3'- -UCAGGUGu----------GUCGCAGCA-GUUGCuuuu -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 87402 | 0.69 | 0.9482 |
Target: 5'- cGUCUcgACGGCGcCGUCGACGGGc- -3' miRNA: 3'- uCAGGugUGUCGCaGCAGUUGCUUuu -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 57782 | 0.69 | 0.943569 |
Target: 5'- cAGUCC--GCGGCGUCGcgCGGCGGGc- -3' miRNA: 3'- -UCAGGugUGUCGCAGCa-GUUGCUUuu -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 49614 | 0.69 | 0.943569 |
Target: 5'- aAGUacaCGCACAGCucGcCGUCGACGAGc- -3' miRNA: 3'- -UCAg--GUGUGUCG--CaGCAGUUGCUUuu -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 99600 | 0.7 | 0.916449 |
Target: 5'- gAGUCCAcCGCgAGCGUCGUCcACa---- -3' miRNA: 3'- -UCAGGU-GUG-UCGCAGCAGuUGcuuuu -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 94468 | 0.71 | 0.910229 |
Target: 5'- -cUCCGCGuCGGCGUCGUCccGCGGGc- -3' miRNA: 3'- ucAGGUGU-GUCGCAGCAGu-UGCUUuu -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 93669 | 0.71 | 0.882749 |
Target: 5'- cGGUCCGCggGCGGCGgCGcCGGCGggGc -3' miRNA: 3'- -UCAGGUG--UGUCGCaGCaGUUGCuuUu -5' |
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23850 | 3' | -50.3 | NC_005261.1 | + | 95826 | 0.72 | 0.867507 |
Target: 5'- cGGUCCuCGCGGCGcUUGUgGGCGGAGu -3' miRNA: 3'- -UCAGGuGUGUCGC-AGCAgUUGCUUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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