miRNA display CGI


Results 41 - 60 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 29480 0.66 0.612122
Target:  5'- aCG-CGGCGCuGGUgGaccugguguacgcGCGCCGCGAcGCCa -3'
miRNA:   3'- -GCgGCUGCG-CCGgC-------------UGCGGCGUU-CGG- -5'
23850 5' -62.6 NC_005261.1 + 74344 0.66 0.603368
Target:  5'- cCGCaGGCGCGGCgGcggaagggGCgGCCGCGuccGCCc -3'
miRNA:   3'- -GCGgCUGCGCCGgC--------UG-CGGCGUu--CGG- -5'
23850 5' -62.6 NC_005261.1 + 72893 0.66 0.602396
Target:  5'- cCGCCGGgguagagcuCGCGGCacuugaGCGCCGCAAacaggguGUCg -3'
miRNA:   3'- -GCGGCU---------GCGCCGgc----UGCGGCGUU-------CGG- -5'
23850 5' -62.6 NC_005261.1 + 14732 0.66 0.603368
Target:  5'- gCGUcaCGACgGUGGCaggggcgauCGGCGCCGCGccgcgacaggggGGCCg -3'
miRNA:   3'- -GCG--GCUG-CGCCG---------GCUGCGGCGU------------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 127361 0.66 0.59269
Target:  5'- gGCCcGCGUGGCUagGAUGUCGUuggcggcggcgagGAGCCc -3'
miRNA:   3'- gCGGcUGCGCCGG--CUGCGGCG-------------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 44180 0.66 0.612122
Target:  5'- gGCCGACaagcuccgcgccaGCGaGCgCGA-GCUGCAGGCg -3'
miRNA:   3'- gCGGCUG-------------CGC-CG-GCUgCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 127213 0.66 0.632583
Target:  5'- aGCgGcGCGCGGCUuaaGCCGCGcgcgucgaaaaAGCCu -3'
miRNA:   3'- gCGgC-UGCGCCGGcugCGGCGU-----------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 35941 0.66 0.610176
Target:  5'- aGCgGGCGCccaggcccgagcccGGCC-AgGCCGCucGGCCg -3'
miRNA:   3'- gCGgCUGCG--------------CCGGcUgCGGCGu-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 38640 0.66 0.613096
Target:  5'- cCGCCGACGgugaCGGUgaaagCGGCgGgUGCGGGCCc -3'
miRNA:   3'- -GCGGCUGC----GCCG-----GCUG-CgGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 126247 0.66 0.59269
Target:  5'- aGCCGcCGCaGCUc-CGCCGCGuccaagaAGCCg -3'
miRNA:   3'- gCGGCuGCGcCGGcuGCGGCGU-------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 10103 0.66 0.59269
Target:  5'- gCGCCccGGCaGCGGCggCGAcagccaccaccacCGCCGCcauGAGCCa -3'
miRNA:   3'- -GCGG--CUG-CGCCG--GCU-------------GCGGCG---UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 117109 0.66 0.613096
Target:  5'- -cCCGACGCGcggcGCUGACcuuGCCGUgucgcucucgAGGCCg -3'
miRNA:   3'- gcGGCUGCGC----CGGCUG---CGGCG----------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 105532 0.66 0.613096
Target:  5'- cCGCCcaccggGACucggGCuGGCCGcACGCgCGCAGGgCCa -3'
miRNA:   3'- -GCGG------CUG----CG-CCGGC-UGCG-GCGUUC-GG- -5'
23850 5' -62.6 NC_005261.1 + 83319 0.66 0.613096
Target:  5'- aGCuCGG-GCGGCgCcACGCCGCccGCCg -3'
miRNA:   3'- gCG-GCUgCGCCG-GcUGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 22535 0.66 0.603368
Target:  5'- aCG-CGACGgagGGCCGGgGCCGC-GGCg -3'
miRNA:   3'- -GCgGCUGCg--CCGGCUgCGGCGuUCGg -5'
23850 5' -62.6 NC_005261.1 + 82658 0.66 0.59366
Target:  5'- aGCaCG-CGCGGauGAgCGCCuCGAGCCg -3'
miRNA:   3'- gCG-GCuGCGCCggCU-GCGGcGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 93373 0.66 0.603368
Target:  5'- gCGCCGGCGUGaGCagGAgGuuGCAgAGCa -3'
miRNA:   3'- -GCGGCUGCGC-CGg-CUgCggCGU-UCGg -5'
23850 5' -62.6 NC_005261.1 + 115760 0.66 0.613096
Target:  5'- uCGUCGGCcccgucucgGCGGCguCGACGUaCGCGuAGCCc -3'
miRNA:   3'- -GCGGCUG---------CGCCG--GCUGCG-GCGU-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 104035 0.66 0.613096
Target:  5'- gCGCCG-CGCaGGaaGuACuGCCGCAGcGCCu -3'
miRNA:   3'- -GCGGCuGCG-CCggC-UG-CGGCGUU-CGG- -5'
23850 5' -62.6 NC_005261.1 + 74830 0.66 0.59366
Target:  5'- cCGCCGugcuCGCGGaCCugggGAgGCgGCGcGCCg -3'
miRNA:   3'- -GCGGCu---GCGCC-GG----CUgCGgCGUuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.