miRNA display CGI


Results 81 - 100 of 1000 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 93373 0.66 0.603368
Target:  5'- gCGCCGGCGUGaGCagGAgGuuGCAgAGCa -3'
miRNA:   3'- -GCGGCUGCGC-CGg-CUgCggCGU-UCGg -5'
23850 5' -62.6 NC_005261.1 + 22655 0.66 0.613096
Target:  5'- gCGCUGGCGgcgccUGGgCGGCGCC-CGAGUg -3'
miRNA:   3'- -GCGGCUGC-----GCCgGCUGCGGcGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 47066 0.66 0.603368
Target:  5'- gGCCGagcGCGUGGUaCGcgugcACGCCgaagGCGGGCCa -3'
miRNA:   3'- gCGGC---UGCGCCG-GC-----UGCGG----CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 103151 0.67 0.574326
Target:  5'- uCGCgGuAC-CGGCCGAagaGCUGCcacAGCCg -3'
miRNA:   3'- -GCGgC-UGcGCCGGCUg--CGGCGu--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 90221 0.67 0.564712
Target:  5'- gCGCCcucGCGCGGCgGgcgggcGCGCCGuCGGGUa -3'
miRNA:   3'- -GCGGc--UGCGCCGgC------UGCGGC-GUUCGg -5'
23850 5' -62.6 NC_005261.1 + 2516 0.67 0.574326
Target:  5'- gCGCCGcgaccucgggGCGgcaguaGGCCGccaGCGCCGCGGcGCUg -3'
miRNA:   3'- -GCGGC----------UGCg-----CCGGC---UGCGGCGUU-CGG- -5'
23850 5' -62.6 NC_005261.1 + 83199 0.67 0.574326
Target:  5'- aGCUGcCGCGuGaCGugGUCGCAGGUg -3'
miRNA:   3'- gCGGCuGCGC-CgGCugCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 131554 0.67 0.574326
Target:  5'- --aCGugGCGGUCGcCGUCGCccGGCUg -3'
miRNA:   3'- gcgGCugCGCCGGCuGCGGCGu-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 30545 0.67 0.574326
Target:  5'- gGaCGAgGaagaGGCCGcCGCCGCcgGGGCCu -3'
miRNA:   3'- gCgGCUgCg---CCGGCuGCGGCG--UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 50946 0.67 0.574326
Target:  5'- uGCUucuACGCGGCCGugGUCGacuacGGCg -3'
miRNA:   3'- gCGGc--UGCGCCGGCugCGGCgu---UCGg -5'
23850 5' -62.6 NC_005261.1 + 59257 0.67 0.564712
Target:  5'- gCGCCGGCGCcacgcgucgcacGGCgUGuCGCCGCccAGCa -3'
miRNA:   3'- -GCGGCUGCG------------CCG-GCuGCGGCGu-UCGg -5'
23850 5' -62.6 NC_005261.1 + 2815 0.67 0.574326
Target:  5'- gGCCGG-GCGGCCccaGCC-CGAGCUc -3'
miRNA:   3'- gCGGCUgCGCCGGcugCGGcGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 129615 0.67 0.574326
Target:  5'- uCG-CGGCGgGGUCgGGCGCCuuuGCAGGCg -3'
miRNA:   3'- -GCgGCUGCgCCGG-CUGCGG---CGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 118011 0.67 0.574326
Target:  5'- gCGCUgGACGCuGUCgGACGCaCGCGGGgCCc -3'
miRNA:   3'- -GCGG-CUGCGcCGG-CUGCG-GCGUUC-GG- -5'
23850 5' -62.6 NC_005261.1 + 77691 0.67 0.574326
Target:  5'- gGCCGggcuACGaCGGCCcccucGAcCGCCGCcccccAGCCa -3'
miRNA:   3'- gCGGC----UGC-GCCGG-----CU-GCGGCGu----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 135514 0.67 0.574326
Target:  5'- aGCCGACGaGuGCCuGACGUggUGCAAGUUc -3'
miRNA:   3'- gCGGCUGCgC-CGG-CUGCG--GCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 97697 0.67 0.574326
Target:  5'- uGCCGGgGCGGUggggaGACGgCgGguGGCCc -3'
miRNA:   3'- gCGGCUgCGCCGg----CUGC-GgCguUCGG- -5'
23850 5' -62.6 NC_005261.1 + 109367 0.67 0.574326
Target:  5'- aGCCGcucgaGCGCGGCCcagagGGC-CCGCAcagGGUCc -3'
miRNA:   3'- gCGGC-----UGCGCCGG-----CUGcGGCGU---UCGG- -5'
23850 5' -62.6 NC_005261.1 + 83754 0.67 0.574326
Target:  5'- uGgCGGCGCgccacGGCCGG-GUCGCAGcGCCc -3'
miRNA:   3'- gCgGCUGCG-----CCGGCUgCGGCGUU-CGG- -5'
23850 5' -62.6 NC_005261.1 + 129723 0.67 0.564712
Target:  5'- cCGCCGGCugcaGCGGCagGGCGgCG-GGGCCc -3'
miRNA:   3'- -GCGGCUG----CGCCGg-CUGCgGCgUUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.