miRNA display CGI


Results 101 - 120 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 101792 0.67 0.574326
Target:  5'- cCGcCCGGCGgGGCUG-CGCaCGUAcGUCa -3'
miRNA:   3'- -GC-GGCUGCgCCGGCuGCG-GCGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 97697 0.67 0.574326
Target:  5'- uGCCGGgGCGGUggggaGACGgCgGguGGCCc -3'
miRNA:   3'- gCGGCUgCGCCGg----CUGC-GgCguUCGG- -5'
23850 5' -62.6 NC_005261.1 + 129615 0.67 0.574326
Target:  5'- uCG-CGGCGgGGUCgGGCGCCuuuGCAGGCg -3'
miRNA:   3'- -GCgGCUGCgCCGG-CUGCGG---CGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 112033 0.67 0.536148
Target:  5'- aGCCGccACGUGGaCGAUGC-GgGAGCCg -3'
miRNA:   3'- gCGGC--UGCGCCgGCUGCGgCgUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 83373 0.67 0.583977
Target:  5'- aCGUCGgcgaGCGCGGCgaGCGCgGCcucGGCCg -3'
miRNA:   3'- -GCGGC----UGCGCCGgcUGCGgCGu--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 103674 0.67 0.574326
Target:  5'- aCGCCcGCGaGGCCGAgCGCcCGUuuauagcGGCCa -3'
miRNA:   3'- -GCGGcUGCgCCGGCU-GCG-GCGu------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 134949 0.67 0.533318
Target:  5'- aGCCGAUggGCGagggcGCCGGCGaCGCAgacggcgaggacggGGCCg -3'
miRNA:   3'- gCGGCUG--CGC-----CGGCUGCgGCGU--------------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 130516 0.67 0.583977
Target:  5'- gCGCaGGCGCuGGCCGaagcGCGCCcGCucGUCg -3'
miRNA:   3'- -GCGgCUGCG-CCGGC----UGCGG-CGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 109367 0.67 0.574326
Target:  5'- aGCCGcucgaGCGCGGCCcagagGGC-CCGCAcagGGUCc -3'
miRNA:   3'- gCGGC-----UGCGCCGG-----CUGcGGCGU---UCGG- -5'
23850 5' -62.6 NC_005261.1 + 93223 0.67 0.535204
Target:  5'- gCGCCaGCGCGGCaaaaaagCGGcCGCCGUc-GCCu -3'
miRNA:   3'- -GCGGcUGCGCCG-------GCU-GCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 2516 0.67 0.574326
Target:  5'- gCGCCGcgaccucgggGCGgcaguaGGCCGccaGCGCCGCGGcGCUg -3'
miRNA:   3'- -GCGGC----------UGCg-----CCGGC---UGCGGCGUU-CGG- -5'
23850 5' -62.6 NC_005261.1 + 43853 0.67 0.583977
Target:  5'- gCGagGACGCGGCCG-CGUCGUccucGGCg -3'
miRNA:   3'- -GCggCUGCGCCGGCuGCGGCGu---UCGg -5'
23850 5' -62.6 NC_005261.1 + 119123 0.67 0.583977
Target:  5'- uGuaGGcCGCGGCCG-CGgCGC-GGCCa -3'
miRNA:   3'- gCggCU-GCGCCGGCuGCgGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 2815 0.67 0.574326
Target:  5'- gGCCGG-GCGGCCccaGCC-CGAGCUc -3'
miRNA:   3'- gCGGCUgCGCCGGcugCGGcGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 118011 0.67 0.574326
Target:  5'- gCGCUgGACGCuGUCgGACGCaCGCGGGgCCc -3'
miRNA:   3'- -GCGG-CUGCGcCGG-CUGCG-GCGUUC-GG- -5'
23850 5' -62.6 NC_005261.1 + 30545 0.67 0.574326
Target:  5'- gGaCGAgGaagaGGCCGcCGCCGCcgGGGCCu -3'
miRNA:   3'- gCgGCUgCg---CCGGCuGCGGCG--UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 131554 0.67 0.574326
Target:  5'- --aCGugGCGGUCGcCGUCGCccGGCUg -3'
miRNA:   3'- gcgGCugCGCCGGCuGCGGCGu-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 110928 0.67 0.583977
Target:  5'- uGCCG-CGCuGGgcaCCGAgCGCCGCccggcGGCCc -3'
miRNA:   3'- gCGGCuGCG-CC---GGCU-GCGGCGu----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 82397 0.67 0.536148
Target:  5'- aGCCcGCGgGGCCGuCGucccCCGCGccGGCCn -3'
miRNA:   3'- gCGGcUGCgCCGGCuGC----GGCGU--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 90703 0.67 0.535204
Target:  5'- uGCUcgaGACGCGGCgGuauauacACGaCCGCuGGGCCg -3'
miRNA:   3'- gCGG---CUGCGCCGgC-------UGC-GGCG-UUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.