miRNA display CGI


Results 121 - 140 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 101792 0.67 0.574326
Target:  5'- cCGcCCGGCGgGGCUG-CGCaCGUAcGUCa -3'
miRNA:   3'- -GC-GGCUGCgCCGGCuGCG-GCGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 83373 0.67 0.583977
Target:  5'- aCGUCGgcgaGCGCGGCgaGCGCgGCcucGGCCg -3'
miRNA:   3'- -GCGGC----UGCGCCGgcUGCGgCGu--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 2815 0.67 0.574326
Target:  5'- gGCCGG-GCGGCCccaGCC-CGAGCUc -3'
miRNA:   3'- gCGGCUgCGCCGGcugCGGcGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 4078 0.67 0.583977
Target:  5'- -cCCGACcgGCGGCagCGGCGCCGuCAcGCUc -3'
miRNA:   3'- gcGGCUG--CGCCG--GCUGCGGC-GUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 110928 0.67 0.583977
Target:  5'- uGCCG-CGCuGGgcaCCGAgCGCCGCccggcGGCCc -3'
miRNA:   3'- gCGGCuGCG-CC---GGCU-GCGGCGu----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 88434 0.67 0.532375
Target:  5'- uCGCgGGCcaccgcuGCuGGCCG-CGCCGCGugagcgugugggcgGGCCg -3'
miRNA:   3'- -GCGgCUG-------CG-CCGGCuGCGGCGU--------------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 46952 0.67 0.583977
Target:  5'- cCGCgGGCcagucCGcGCCGuCGCCGCu-GCCg -3'
miRNA:   3'- -GCGgCUGc----GC-CGGCuGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 82397 0.67 0.536148
Target:  5'- aGCCcGCGgGGCCGuCGucccCCGCGccGGCCn -3'
miRNA:   3'- gCGGcUGCgCCGGCuGC----GGCGU--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 110867 0.67 0.536148
Target:  5'- aGCCG-CGCGGCCuacCGCUGCcccGUCu -3'
miRNA:   3'- gCGGCuGCGCCGGcu-GCGGCGuu-CGG- -5'
23850 5' -62.6 NC_005261.1 + 118011 0.67 0.574326
Target:  5'- gCGCUgGACGCuGUCgGACGCaCGCGGGgCCc -3'
miRNA:   3'- -GCGG-CUGCGcCGG-CUGCG-GCGUUC-GG- -5'
23850 5' -62.6 NC_005261.1 + 94602 0.67 0.574326
Target:  5'- cCGCCcacgaGCGCGcGCCcuCGCCGCc-GCCg -3'
miRNA:   3'- -GCGGc----UGCGC-CGGcuGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 50946 0.67 0.574326
Target:  5'- uGCUucuACGCGGCCGugGUCGacuacGGCg -3'
miRNA:   3'- gCGGc--UGCGCCGGCugCGGCgu---UCGg -5'
23850 5' -62.6 NC_005261.1 + 130118 0.67 0.536148
Target:  5'- gCGCCuuGGCGagccGCCGcGCGCCGUccGCCg -3'
miRNA:   3'- -GCGG--CUGCgc--CGGC-UGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 91944 0.67 0.532375
Target:  5'- uGCCacACGUGGgCGACGaucuuguacccggCGCAGGCCg -3'
miRNA:   3'- gCGGc-UGCGCCgGCUGCg------------GCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 93223 0.67 0.535204
Target:  5'- gCGCCaGCGCGGCaaaaaagCGGcCGCCGUc-GCCu -3'
miRNA:   3'- -GCGGcUGCGCCG-------GCU-GCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 134949 0.67 0.533318
Target:  5'- aGCCGAUggGCGagggcGCCGGCGaCGCAgacggcgaggacggGGCCg -3'
miRNA:   3'- gCGGCUG--CGC-----CGGCUGCgGCGU--------------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 125151 0.67 0.583977
Target:  5'- uCGCCGGCGCcGUgauUGGgGCCGC-GGUCa -3'
miRNA:   3'- -GCGGCUGCGcCG---GCUgCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 30545 0.67 0.574326
Target:  5'- gGaCGAgGaagaGGCCGcCGCCGCcgGGGCCu -3'
miRNA:   3'- gCgGCUgCg---CCGGCuGCGGCG--UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 97697 0.67 0.574326
Target:  5'- uGCCGGgGCGGUggggaGACGgCgGguGGCCc -3'
miRNA:   3'- gCGGCUgCGCCGg----CUGC-GgCguUCGG- -5'
23850 5' -62.6 NC_005261.1 + 49910 0.67 0.583977
Target:  5'- aCGCaGACGUuguGGCCcgccucgaGGCGcCCGCgGAGCCg -3'
miRNA:   3'- -GCGgCUGCG---CCGG--------CUGC-GGCG-UUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.