miRNA display CGI


Results 41 - 60 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 68696 0.8 0.085896
Target:  5'- gGCCGGCGCGGacgaCGGCGgCGCcGGCCc -3'
miRNA:   3'- gCGGCUGCGCCg---GCUGCgGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 132067 0.8 0.083747
Target:  5'- gGCCGAgguCGCGGCCGccguCGCCGCu-GCCg -3'
miRNA:   3'- gCGGCU---GCGCCGGCu---GCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 105663 0.8 0.083747
Target:  5'- uCGCCGGCGCGGaaGACGCC-CAcGCCc -3'
miRNA:   3'- -GCGGCUGCGCCggCUGCGGcGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 106563 0.79 0.110469
Target:  5'- gGCCGGCGCGcGCCGGCcCCG-GGGCCg -3'
miRNA:   3'- gCGGCUGCGC-CGGCUGcGGCgUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 77000 0.79 0.111577
Target:  5'- uCGCCGcGCGCGcgcgccgcccuccucGCCGACGCCG-AGGCCg -3'
miRNA:   3'- -GCGGC-UGCGC---------------CGGCUGCGGCgUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 3841 0.79 0.11326
Target:  5'- gCGCUGGCggcaGCGgcGCCGGCGCCGCGcGGCCg -3'
miRNA:   3'- -GCGGCUG----CGC--CGGCUGCGGCGU-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 15730 0.79 0.11326
Target:  5'- aCG-CGACGgGGCCGucCGCgCGCAGGCCg -3'
miRNA:   3'- -GCgGCUGCgCCGGCu-GCG-GCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 31288 0.79 0.11326
Target:  5'- gGCCGAgauCGCGGcCCGcCGCCGCGcggGGCCc -3'
miRNA:   3'- gCGGCU---GCGCC-GGCuGCGGCGU---UCGG- -5'
23850 5' -62.6 NC_005261.1 + 46734 0.79 0.11326
Target:  5'- aCGCCGGCGCGuGCaCG-UGCCGCA-GCCc -3'
miRNA:   3'- -GCGGCUGCGC-CG-GCuGCGGCGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 105971 0.79 0.11326
Target:  5'- gCGCCcaGCGCGGCguCGACGCCGCccgcgaAGGCCa -3'
miRNA:   3'- -GCGGc-UGCGCCG--GCUGCGGCG------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 1170 0.79 0.110193
Target:  5'- gCGCCGGCccgcgccGCGGCCGGgGCCG-GGGCCg -3'
miRNA:   3'- -GCGGCUG-------CGCCGGCUgCGGCgUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 97158 0.79 0.105078
Target:  5'- gCGCCGGCcCGGCCGGCuggGUCGCGGGCg -3'
miRNA:   3'- -GCGGCUGcGCCGGCUG---CGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 54835 0.79 0.104815
Target:  5'- aCGCgGGCagggcuaGCuGCCGGCGCCGCAGGCUg -3'
miRNA:   3'- -GCGgCUG-------CGcCGGCUGCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 32226 0.79 0.103509
Target:  5'- gGCCGcggcgguggccuucuGCGCGGCCG-CGCUGCugGAGCCg -3'
miRNA:   3'- gCGGC---------------UGCGCCGGCuGCGGCG--UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 68209 0.79 0.102476
Target:  5'- cCGCCGGCGCGGCCGACaaCgGCGAcCCu -3'
miRNA:   3'- -GCGGCUGCGCCGGCUGc-GgCGUUcGG- -5'
23850 5' -62.6 NC_005261.1 + 32315 0.79 0.102476
Target:  5'- cCGCCGcCGCGGCCGcgGCGCCcgGCGuGGCCu -3'
miRNA:   3'- -GCGGCuGCGCCGGC--UGCGG--CGU-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 121191 0.79 0.102476
Target:  5'- gGCCGGgGCcgGGcCCGGgGCCGCGGGCCg -3'
miRNA:   3'- gCGGCUgCG--CC-GGCUgCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 42209 0.79 0.102476
Target:  5'- gCGCCG-CGCGGgCGcccCGCCGCGAGCUc -3'
miRNA:   3'- -GCGGCuGCGCCgGCu--GCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 95788 0.79 0.099935
Target:  5'- gCGCCGGCGCGcugcuaGCCGGCGCCgGCGggGGCUc -3'
miRNA:   3'- -GCGGCUGCGC------CGGCUGCGG-CGU--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 64036 0.79 0.099935
Target:  5'- uCGUCGGCGCGGCUcuGCGCCGCGuggugcGCCa -3'
miRNA:   3'- -GCGGCUGCGCCGGc-UGCGGCGUu-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.