Results 81 - 100 of 1000 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 120004 | 0.78 | 0.122036 |
Target: 5'- gCGCCGgcuACGCGGCCGuguGCCGCGccGCCg -3' miRNA: 3'- -GCGGC---UGCGCCGGCug-CGGCGUu-CGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 132582 | 0.78 | 0.124789 |
Target: 5'- aCGUCGGCGCGcccGCgGACGCCcggcccgGCGAGCCg -3' miRNA: 3'- -GCGGCUGCGC---CGgCUGCGG-------CGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 127779 | 0.78 | 0.124789 |
Target: 5'- aCGCCcggcugcucgagcGGCG-GGCCGGCGCCGCGgcggcgGGCCg -3' miRNA: 3'- -GCGG-------------CUGCgCCGGCUGCGGCGU------UCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 54144 | 0.77 | 0.145017 |
Target: 5'- aCGCCGcACGCGGCCGuGCGCgGgGuuGCCg -3' miRNA: 3'- -GCGGC-UGCGCCGGC-UGCGgCgUu-CGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 100599 | 0.77 | 0.145017 |
Target: 5'- gCGCCGccACGCGGCCG-CGCagguGCAGGUCc -3' miRNA: 3'- -GCGGC--UGCGCCGGCuGCGg---CGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 100682 | 0.77 | 0.145017 |
Target: 5'- gCGCgCGAgugcacCGCGGCCGcggcgcGCGCCGCccGAGCCg -3' miRNA: 3'- -GCG-GCU------GCGCCGGC------UGCGGCG--UUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 117700 | 0.77 | 0.145017 |
Target: 5'- gGCCGGCccugaGGCCGGCG-CGCGGGCCc -3' miRNA: 3'- gCGGCUGcg---CCGGCUGCgGCGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 97857 | 0.77 | 0.145017 |
Target: 5'- cCGCCGcggcaGCGCGGCCGGCaucgauuuccgaGCCcCGGGCCg -3' miRNA: 3'- -GCGGC-----UGCGCCGGCUG------------CGGcGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 12138 | 0.77 | 0.145017 |
Target: 5'- cCGCCGcCGCGGCgGcCG-CGCAGGCCc -3' miRNA: 3'- -GCGGCuGCGCCGgCuGCgGCGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 101574 | 0.77 | 0.148606 |
Target: 5'- gCGCuCGGCGCGcGCCGugGCCuccgcGCGcGCCg -3' miRNA: 3'- -GCG-GCUGCGC-CGGCugCGG-----CGUuCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 33606 | 0.77 | 0.145017 |
Target: 5'- gCGCCGGCGCGGgCGGCGgggcCCGgGGGCg -3' miRNA: 3'- -GCGGCUGCGCCgGCUGC----GGCgUUCGg -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 119554 | 0.77 | 0.141507 |
Target: 5'- cCGCCG-CGgGGCCGcaaguggauGCGCUGCGAGCg -3' miRNA: 3'- -GCGGCuGCgCCGGC---------UGCGGCGUUCGg -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 91485 | 0.77 | 0.141507 |
Target: 5'- gCGCCGcCGCGGCCGcCGCCcgccccGCGcGCCu -3' miRNA: 3'- -GCGGCuGCGCCGGCuGCGG------CGUuCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 11924 | 0.77 | 0.14116 |
Target: 5'- gGCCGGCggcugcgGCGGCCcGCGCCGCGgcGGCUc -3' miRNA: 3'- gCGGCUG-------CGCCGGcUGCGGCGU--UCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 135002 | 0.77 | 0.138075 |
Target: 5'- gCGCCccuGGCGCGGCgGGC-CCGCAcgcGGCCg -3' miRNA: 3'- -GCGG---CUGCGCCGgCUGcGGCGU---UCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 118938 | 0.77 | 0.138075 |
Target: 5'- gCGCCG-CGCGGCUGGcCGCgGCGcacguGGCCa -3' miRNA: 3'- -GCGGCuGCGCCGGCU-GCGgCGU-----UCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 30368 | 0.77 | 0.138075 |
Target: 5'- gGCCGGCGC-GCCgGGCGCCGCGGcGCg -3' miRNA: 3'- gCGGCUGCGcCGG-CUGCGGCGUU-CGg -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 3505 | 0.77 | 0.138075 |
Target: 5'- gCGCCGccaGCGCGGCCGccuccaGCGCgGC-GGCCg -3' miRNA: 3'- -GCGGC---UGCGCCGGC------UGCGgCGuUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 97763 | 0.77 | 0.134719 |
Target: 5'- uCGgCGGCGCGGCCGGCaucgacucccgaGCCcCGGGCCg -3' miRNA: 3'- -GCgGCUGCGCCGGCUG------------CGGcGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 109023 | 0.77 | 0.148606 |
Target: 5'- gGCCGaACGCcGCCGugGCgCGC-AGCCg -3' miRNA: 3'- gCGGC-UGCGcCGGCugCG-GCGuUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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