miRNA display CGI


Results 101 - 120 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 3505 0.77 0.138075
Target:  5'- gCGCCGccaGCGCGGCCGccuccaGCGCgGC-GGCCg -3'
miRNA:   3'- -GCGGC---UGCGCCGGC------UGCGgCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 30368 0.77 0.138075
Target:  5'- gGCCGGCGC-GCCgGGCGCCGCGGcGCg -3'
miRNA:   3'- gCGGCUGCGcCGG-CUGCGGCGUU-CGg -5'
23850 5' -62.6 NC_005261.1 + 118938 0.77 0.138075
Target:  5'- gCGCCG-CGCGGCUGGcCGCgGCGcacguGGCCa -3'
miRNA:   3'- -GCGGCuGCGCCGGCU-GCGgCGU-----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 135002 0.77 0.138075
Target:  5'- gCGCCccuGGCGCGGCgGGC-CCGCAcgcGGCCg -3'
miRNA:   3'- -GCGG---CUGCGCCGgCUGcGGCGU---UCGG- -5'
23850 5' -62.6 NC_005261.1 + 11924 0.77 0.14116
Target:  5'- gGCCGGCggcugcgGCGGCCcGCGCCGCGgcGGCUc -3'
miRNA:   3'- gCGGCUG-------CGCCGGcUGCGGCGU--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 91485 0.77 0.141507
Target:  5'- gCGCCGcCGCGGCCGcCGCCcgccccGCGcGCCu -3'
miRNA:   3'- -GCGGCuGCGCCGGCuGCGG------CGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 100682 0.77 0.145017
Target:  5'- gCGCgCGAgugcacCGCGGCCGcggcgcGCGCCGCccGAGCCg -3'
miRNA:   3'- -GCG-GCU------GCGCCGGC------UGCGGCG--UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 100599 0.77 0.145017
Target:  5'- gCGCCGccACGCGGCCG-CGCagguGCAGGUCc -3'
miRNA:   3'- -GCGGC--UGCGCCGGCuGCGg---CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 54144 0.77 0.145017
Target:  5'- aCGCCGcACGCGGCCGuGCGCgGgGuuGCCg -3'
miRNA:   3'- -GCGGC-UGCGCCGGC-UGCGgCgUu-CGG- -5'
23850 5' -62.6 NC_005261.1 + 33606 0.77 0.145017
Target:  5'- gCGCCGGCGCGGgCGGCGgggcCCGgGGGCg -3'
miRNA:   3'- -GCGGCUGCGCCgGCUGC----GGCgUUCGg -5'
23850 5' -62.6 NC_005261.1 + 119554 0.77 0.141507
Target:  5'- cCGCCG-CGgGGCCGcaaguggauGCGCUGCGAGCg -3'
miRNA:   3'- -GCGGCuGCgCCGGC---------UGCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 93805 0.76 0.159864
Target:  5'- gCGCCGcCGCGcGCCGccgccacCGCCGC-AGCCg -3'
miRNA:   3'- -GCGGCuGCGC-CGGCu------GCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 118381 0.76 0.159864
Target:  5'- gCGCgCGGCccgaggcgcugGCGGCCGcggGCGCCGC-AGCCg -3'
miRNA:   3'- -GCG-GCUG-----------CGCCGGC---UGCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 90116 0.76 0.159864
Target:  5'- gGCCGACGCGGCCcGCGgCGaGGGCg -3'
miRNA:   3'- gCGGCUGCGCCGGcUGCgGCgUUCGg -5'
23850 5' -62.6 NC_005261.1 + 28828 0.76 0.159864
Target:  5'- aGCCGAgGCGGCCGcggcugagGCgGCCGUcguGGCCg -3'
miRNA:   3'- gCGGCUgCGCCGGC--------UG-CGGCGu--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 68126 0.76 0.159864
Target:  5'- gCGCgGGcCGCGGCgCGGCGaCCGCGccguGGCCg -3'
miRNA:   3'- -GCGgCU-GCGCCG-GCUGC-GGCGU----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 70938 0.76 0.156029
Target:  5'- gCGCCuGCGCGuccgccgggaacGCCGACGCCGCGacGGCg -3'
miRNA:   3'- -GCGGcUGCGC------------CGGCUGCGGCGU--UCGg -5'
23850 5' -62.6 NC_005261.1 + 99482 0.76 0.156029
Target:  5'- gGCCGcUGCGGCCaGCGCCGCcgcguccuccgaGGGCCc -3'
miRNA:   3'- gCGGCuGCGCCGGcUGCGGCG------------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 48667 0.76 0.156029
Target:  5'- aGCCG-CGCGGCaaCGGCGacuacgggcCCGCGGGCCa -3'
miRNA:   3'- gCGGCuGCGCCG--GCUGC---------GGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 118906 0.76 0.159864
Target:  5'- gGCCuGCGUcugGGuCCGGCGCCGCGGGCg -3'
miRNA:   3'- gCGGcUGCG---CC-GGCUGCGGCGUUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.