miRNA display CGI


Results 121 - 140 of 1000 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 42263 0.76 0.176069
Target:  5'- cCGCgCGAgGCGGCCG-CGCCcaGC-AGCCg -3'
miRNA:   3'- -GCG-GCUgCGCCGGCuGCGG--CGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 133208 0.76 0.176069
Target:  5'- uCGCCGACGCcGUCGAgGCCGagcugGGGCCc -3'
miRNA:   3'- -GCGGCUGCGcCGGCUgCGGCg----UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 42677 0.76 0.180343
Target:  5'- gGCCGGgcCGCcGCCGGCaGCCGCGcGGCCg -3'
miRNA:   3'- gCGGCU--GCGcCGGCUG-CGGCGU-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 104121 0.76 0.180343
Target:  5'- aGCCG-CGCGGUu--CGCCGCGAGCUc -3'
miRNA:   3'- gCGGCuGCGCCGgcuGCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 114344 0.76 0.180343
Target:  5'- gGCuCGA-GCGGCgCGugGCCGC-GGCCg -3'
miRNA:   3'- gCG-GCUgCGCCG-GCugCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 76149 0.76 0.163785
Target:  5'- gGUCGugGCGGCgcaCGACGCCGUGGcGCUg -3'
miRNA:   3'- gCGGCugCGCCG---GCUGCGGCGUU-CGG- -5'
23850 5' -62.6 NC_005261.1 + 65651 0.76 0.163785
Target:  5'- uCGCCucuGGCGCGcGCCGGCGC-GCAGcGCCg -3'
miRNA:   3'- -GCGG---CUGCGC-CGGCUGCGgCGUU-CGG- -5'
23850 5' -62.6 NC_005261.1 + 48667 0.76 0.156029
Target:  5'- aGCCG-CGCGGCaaCGGCGacuacgggcCCGCGGGCCa -3'
miRNA:   3'- gCGGCuGCGCCG--GCUGC---------GGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 99482 0.76 0.156029
Target:  5'- gGCCGcUGCGGCCaGCGCCGCcgcguccuccgaGGGCCc -3'
miRNA:   3'- gCGGCuGCGCCGGcUGCGGCG------------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 70938 0.76 0.156029
Target:  5'- gCGCCuGCGCGuccgccgggaacGCCGACGCCGCGacGGCg -3'
miRNA:   3'- -GCGGcUGCGC------------CGGCUGCGGCGU--UCGg -5'
23850 5' -62.6 NC_005261.1 + 68126 0.76 0.159864
Target:  5'- gCGCgGGcCGCGGCgCGGCGaCCGCGccguGGCCg -3'
miRNA:   3'- -GCGgCU-GCGCCG-GCUGC-GGCGU----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 28828 0.76 0.159864
Target:  5'- aGCCGAgGCGGCCGcggcugagGCgGCCGUcguGGCCg -3'
miRNA:   3'- gCGGCUgCGCCGGC--------UG-CGGCGu--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 90116 0.76 0.159864
Target:  5'- gGCCGACGCGGCCcGCGgCGaGGGCg -3'
miRNA:   3'- gCGGCUGCGCCGGcUGCgGCgUUCGg -5'
23850 5' -62.6 NC_005261.1 + 118381 0.76 0.159864
Target:  5'- gCGCgCGGCccgaggcgcugGCGGCCGcggGCGCCGC-AGCCg -3'
miRNA:   3'- -GCG-GCUG-----------CGCCGGC---UGCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 93805 0.76 0.159864
Target:  5'- gCGCCGcCGCGcGCCGccgccacCGCCGC-AGCCg -3'
miRNA:   3'- -GCGGCuGCGC-CGGCu------GCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 118906 0.76 0.159864
Target:  5'- gGCCuGCGUcugGGuCCGGCGCCGCGGGCg -3'
miRNA:   3'- gCGGcUGCG---CC-GGCUGCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 86208 0.76 0.163389
Target:  5'- gCGUCGGCGCGccgaaccggggcaGCCGGUGCCGC-AGCCg -3'
miRNA:   3'- -GCGGCUGCGC-------------CGGCUGCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 3912 0.76 0.163785
Target:  5'- gCGCCcGCGCcGCCGGCGCCggccuccggGUAGGCCa -3'
miRNA:   3'- -GCGGcUGCGcCGGCUGCGG---------CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 29695 0.76 0.163785
Target:  5'- cCGCaCGugGCGGCCuGCGUgGCcauGAGCCg -3'
miRNA:   3'- -GCG-GCugCGCCGGcUGCGgCG---UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 55416 0.76 0.163785
Target:  5'- aCGCgCG-CGcCGGCUGGCGCCaccGCGAGCCc -3'
miRNA:   3'- -GCG-GCuGC-GCCGGCUGCGG---CGUUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.