miRNA display CGI


Results 61 - 80 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 103387 0.78 0.119042
Target:  5'- cCGCCGcgcCGCGGCCGccuGCGCCuccagcuccgcGCGGGCCg -3'
miRNA:   3'- -GCGGCu--GCGCCGGC---UGCGG-----------CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 95749 0.78 0.119042
Target:  5'- cCGCCGcCGCcGCCGgggGCGCCGgGAGCCu -3'
miRNA:   3'- -GCGGCuGCGcCGGC---UGCGGCgUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 88194 0.78 0.119042
Target:  5'- gCGCCGGCGaggcgGGCCG-CGCCGgCAAGCg -3'
miRNA:   3'- -GCGGCUGCg----CCGGCuGCGGC-GUUCGg -5'
23850 5' -62.6 NC_005261.1 + 58467 0.78 0.119042
Target:  5'- uCGCCgGGCGCGuaUGA-GCCGCAGGCCg -3'
miRNA:   3'- -GCGG-CUGCGCcgGCUgCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 134194 0.78 0.119042
Target:  5'- gGCCuGGCGCGGCuCGGCGC-GCGGGUCg -3'
miRNA:   3'- gCGG-CUGCGCCG-GCUGCGgCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 106367 0.78 0.122036
Target:  5'- gCGCUGACGCcGCCGuCGCCGUu-GCCg -3'
miRNA:   3'- -GCGGCUGCGcCGGCuGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 15793 0.78 0.122036
Target:  5'- gCGCCGcccGCGCGGCCaGCGCCGCcacccagaaGAGCa -3'
miRNA:   3'- -GCGGC---UGCGCCGGcUGCGGCG---------UUCGg -5'
23850 5' -62.6 NC_005261.1 + 120004 0.78 0.122036
Target:  5'- gCGCCGgcuACGCGGCCGuguGCCGCGccGCCg -3'
miRNA:   3'- -GCGGC---UGCGCCGGCug-CGGCGUu-CGG- -5'
23850 5' -62.6 NC_005261.1 + 132582 0.78 0.124789
Target:  5'- aCGUCGGCGCGcccGCgGACGCCcggcccgGCGAGCCg -3'
miRNA:   3'- -GCGGCUGCGC---CGgCUGCGG-------CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 127779 0.78 0.124789
Target:  5'- aCGCCcggcugcucgagcGGCG-GGCCGGCGCCGCGgcggcgGGCCg -3'
miRNA:   3'- -GCGG-------------CUGCgCCGGCUGCGGCGU------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 82555 0.78 0.125098
Target:  5'- uCGCC--CGCGGCCGcGCGCCGCAgcAGCUc -3'
miRNA:   3'- -GCGGcuGCGCCGGC-UGCGGCGU--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 4382 0.78 0.125098
Target:  5'- cCGCCGAagcgcaCGCGGCCGggcggcggcggcGCGCUGCcGGGCCa -3'
miRNA:   3'- -GCGGCU------GCGCCGGC------------UGCGGCG-UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 133844 0.78 0.125098
Target:  5'- uGCgCGcCGUGGCCGGCGCgCGCGAcuGCCg -3'
miRNA:   3'- gCG-GCuGCGCCGGCUGCG-GCGUU--CGG- -5'
23850 5' -62.6 NC_005261.1 + 132839 0.78 0.125098
Target:  5'- uCGUCGACGCGGCCGucuacACGCacggGCAcAGCCu -3'
miRNA:   3'- -GCGGCUGCGCCGGC-----UGCGg---CGU-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 118581 0.78 0.127285
Target:  5'- gCGgCGGCGCGcGCCGcCGCCGCGgagcucgcgcugucGGCCg -3'
miRNA:   3'- -GCgGCUGCGC-CGGCuGCGGCGU--------------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 2262 0.78 0.128233
Target:  5'- cCGCCGGCGCucguccucgccGGgCGGCGCCGCcAGCg -3'
miRNA:   3'- -GCGGCUGCG-----------CCgGCUGCGGCGuUCGg -5'
23850 5' -62.6 NC_005261.1 + 57967 0.78 0.131115
Target:  5'- aCGCCGgcgacgcaggcgcGCGCGGCCG-CGCCGCcaaaAAGCg -3'
miRNA:   3'- -GCGGC-------------UGCGCCGGCuGCGGCG----UUCGg -5'
23850 5' -62.6 NC_005261.1 + 2040 0.78 0.131439
Target:  5'- cCGCCGcgcCGCGGCCa--GCCGCAGGCa -3'
miRNA:   3'- -GCGGCu--GCGCCGGcugCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 95032 0.78 0.131439
Target:  5'- cCGCCGGCgGCGcUCGGCGCCGCAGaccGCCc -3'
miRNA:   3'- -GCGGCUG-CGCcGGCUGCGGCGUU---CGG- -5'
23850 5' -62.6 NC_005261.1 + 124241 0.78 0.131439
Target:  5'- cCGCCGcCGCGGgCaGGCGCCGCGcggcGCCg -3'
miRNA:   3'- -GCGGCuGCGCCgG-CUGCGGCGUu---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.