miRNA display CGI


Results 81 - 100 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 124241 0.78 0.131439
Target:  5'- cCGCCGcCGCGGgCaGGCGCCGCGcggcGCCg -3'
miRNA:   3'- -GCGGCuGCGCCgG-CUGCGGCGUu---CGG- -5'
23850 5' -62.6 NC_005261.1 + 43160 0.78 0.131439
Target:  5'- cCGCCGAcauCGCGGCgcgauaCGGCGCCGCcGGCg -3'
miRNA:   3'- -GCGGCU---GCGCCG------GCUGCGGCGuUCGg -5'
23850 5' -62.6 NC_005261.1 + 2706 0.78 0.132742
Target:  5'- gGCCGGCGCcgggccccuggccccGGCCGacuugcgcuuGCGCCGCGgcgGGCCg -3'
miRNA:   3'- gCGGCUGCG---------------CCGGC----------UGCGGCGU---UCGG- -5'
23850 5' -62.6 NC_005261.1 + 25276 0.77 0.134388
Target:  5'- uCGCCGcgaggggGCGCGGuCUGugGCCGUGAGCg -3'
miRNA:   3'- -GCGGC-------UGCGCC-GGCugCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 97763 0.77 0.134719
Target:  5'- uCGgCGGCGCGGCCGGCaucgacucccgaGCCcCGGGCCg -3'
miRNA:   3'- -GCgGCUGCGCCGGCUG------------CGGcGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 3505 0.77 0.138075
Target:  5'- gCGCCGccaGCGCGGCCGccuccaGCGCgGC-GGCCg -3'
miRNA:   3'- -GCGGC---UGCGCCGGC------UGCGgCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 30368 0.77 0.138075
Target:  5'- gGCCGGCGC-GCCgGGCGCCGCGGcGCg -3'
miRNA:   3'- gCGGCUGCGcCGG-CUGCGGCGUU-CGg -5'
23850 5' -62.6 NC_005261.1 + 118938 0.77 0.138075
Target:  5'- gCGCCG-CGCGGCUGGcCGCgGCGcacguGGCCa -3'
miRNA:   3'- -GCGGCuGCGCCGGCU-GCGgCGU-----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 135002 0.77 0.138075
Target:  5'- gCGCCccuGGCGCGGCgGGC-CCGCAcgcGGCCg -3'
miRNA:   3'- -GCGG---CUGCGCCGgCUGcGGCGU---UCGG- -5'
23850 5' -62.6 NC_005261.1 + 11924 0.77 0.14116
Target:  5'- gGCCGGCggcugcgGCGGCCcGCGCCGCGgcGGCUc -3'
miRNA:   3'- gCGGCUG-------CGCCGGcUGCGGCGU--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 91485 0.77 0.141507
Target:  5'- gCGCCGcCGCGGCCGcCGCCcgccccGCGcGCCu -3'
miRNA:   3'- -GCGGCuGCGCCGGCuGCGG------CGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 119554 0.77 0.141507
Target:  5'- cCGCCG-CGgGGCCGcaaguggauGCGCUGCGAGCg -3'
miRNA:   3'- -GCGGCuGCgCCGGC---------UGCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 12138 0.77 0.145017
Target:  5'- cCGCCGcCGCGGCgGcCG-CGCAGGCCc -3'
miRNA:   3'- -GCGGCuGCGCCGgCuGCgGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 97857 0.77 0.145017
Target:  5'- cCGCCGcggcaGCGCGGCCGGCaucgauuuccgaGCCcCGGGCCg -3'
miRNA:   3'- -GCGGC-----UGCGCCGGCUG------------CGGcGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 117700 0.77 0.145017
Target:  5'- gGCCGGCccugaGGCCGGCG-CGCGGGCCc -3'
miRNA:   3'- gCGGCUGcg---CCGGCUGCgGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 100682 0.77 0.145017
Target:  5'- gCGCgCGAgugcacCGCGGCCGcggcgcGCGCCGCccGAGCCg -3'
miRNA:   3'- -GCG-GCU------GCGCCGGC------UGCGGCG--UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 100599 0.77 0.145017
Target:  5'- gCGCCGccACGCGGCCG-CGCagguGCAGGUCc -3'
miRNA:   3'- -GCGGC--UGCGCCGGCuGCGg---CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 54144 0.77 0.145017
Target:  5'- aCGCCGcACGCGGCCGuGCGCgGgGuuGCCg -3'
miRNA:   3'- -GCGGC-UGCGCCGGC-UGCGgCgUu-CGG- -5'
23850 5' -62.6 NC_005261.1 + 33606 0.77 0.145017
Target:  5'- gCGCCGGCGCGGgCGGCGgggcCCGgGGGCg -3'
miRNA:   3'- -GCGGCUGCGCCgGCUGC----GGCgUUCGg -5'
23850 5' -62.6 NC_005261.1 + 109023 0.77 0.148606
Target:  5'- gGCCGaACGCcGCCGugGCgCGC-AGCCg -3'
miRNA:   3'- gCGGC-UGCGcCGGCugCG-GCGuUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.