miRNA display CGI


Results 101 - 120 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 90393 0.77 0.148606
Target:  5'- cCGCCGGCGgGGCUGGCGCC-CGGcGCg -3'
miRNA:   3'- -GCGGCUGCgCCGGCUGCGGcGUU-CGg -5'
23850 5' -62.6 NC_005261.1 + 48809 0.77 0.148606
Target:  5'- gGCCGuGCGCGGCguccgCGACGCCGUcgucGGCCc -3'
miRNA:   3'- gCGGC-UGCGCCG-----GCUGCGGCGu---UCGG- -5'
23850 5' -62.6 NC_005261.1 + 109023 0.77 0.148606
Target:  5'- gGCCGaACGCcGCCGugGCgCGC-AGCCg -3'
miRNA:   3'- gCGGC-UGCGcCGGCugCG-GCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 101574 0.77 0.148606
Target:  5'- gCGCuCGGCGCGcGCCGugGCCuccgcGCGcGCCg -3'
miRNA:   3'- -GCG-GCUGCGC-CGGCugCGG-----CGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 111559 0.77 0.152277
Target:  5'- cCGCCuGCcCGGCCGACGCgGCAgagcagcucgaGGCCg -3'
miRNA:   3'- -GCGGcUGcGCCGGCUGCGgCGU-----------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 58544 0.77 0.152277
Target:  5'- cCGCCGcccgggcuccuGCGCcGUCGugGCCGCGAGCg -3'
miRNA:   3'- -GCGGC-----------UGCGcCGGCugCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 29251 0.77 0.152277
Target:  5'- cCGCgCGACG-GGCCGcCGCCGCuggaGGGCCc -3'
miRNA:   3'- -GCG-GCUGCgCCGGCuGCGGCG----UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 82881 0.77 0.152277
Target:  5'- gCGCUGGCgGUGGCCu-CGCCGCGcGCCg -3'
miRNA:   3'- -GCGGCUG-CGCCGGcuGCGGCGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 68737 0.77 0.152277
Target:  5'- gCGCCGGCGgGaagaagcgcccGCCGggGCGCCGCgGAGCCg -3'
miRNA:   3'- -GCGGCUGCgC-----------CGGC--UGCGGCG-UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 44717 0.77 0.152277
Target:  5'- gGCUGACGCGcGCagGGCGCUGCAgcugGGCCc -3'
miRNA:   3'- gCGGCUGCGC-CGg-CUGCGGCGU----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 39797 0.77 0.152277
Target:  5'- gGgCGGCGCGGCCGccgGCGCCagGCucuGGCCg -3'
miRNA:   3'- gCgGCUGCGCCGGC---UGCGG--CGu--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 69246 0.76 0.15565
Target:  5'- uCGCCGagGCGCuGGCCcGCGCCgaccccgGCGAGCCg -3'
miRNA:   3'- -GCGGC--UGCG-CCGGcUGCGG-------CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 70938 0.76 0.156029
Target:  5'- gCGCCuGCGCGuccgccgggaacGCCGACGCCGCGacGGCg -3'
miRNA:   3'- -GCGGcUGCGC------------CGGCUGCGGCGU--UCGg -5'
23850 5' -62.6 NC_005261.1 + 99482 0.76 0.156029
Target:  5'- gGCCGcUGCGGCCaGCGCCGCcgcguccuccgaGGGCCc -3'
miRNA:   3'- gCGGCuGCGCCGGcUGCGGCG------------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 48667 0.76 0.156029
Target:  5'- aGCCG-CGCGGCaaCGGCGacuacgggcCCGCGGGCCa -3'
miRNA:   3'- gCGGCuGCGCCG--GCUGC---------GGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 28828 0.76 0.159864
Target:  5'- aGCCGAgGCGGCCGcggcugagGCgGCCGUcguGGCCg -3'
miRNA:   3'- gCGGCUgCGCCGGC--------UG-CGGCGu--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 90116 0.76 0.159864
Target:  5'- gGCCGACGCGGCCcGCGgCGaGGGCg -3'
miRNA:   3'- gCGGCUGCGCCGGcUGCgGCgUUCGg -5'
23850 5' -62.6 NC_005261.1 + 118381 0.76 0.159864
Target:  5'- gCGCgCGGCccgaggcgcugGCGGCCGcggGCGCCGC-AGCCg -3'
miRNA:   3'- -GCG-GCUG-----------CGCCGGC---UGCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 93805 0.76 0.159864
Target:  5'- gCGCCGcCGCGcGCCGccgccacCGCCGC-AGCCg -3'
miRNA:   3'- -GCGGCuGCGC-CGGCu------GCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 118906 0.76 0.159864
Target:  5'- gGCCuGCGUcugGGuCCGGCGCCGCGGGCg -3'
miRNA:   3'- gCGGcUGCG---CC-GGCUGCGGCGUUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.