Results 121 - 140 of 1000 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 68126 | 0.76 | 0.159864 |
Target: 5'- gCGCgGGcCGCGGCgCGGCGaCCGCGccguGGCCg -3' miRNA: 3'- -GCGgCU-GCGCCG-GCUGC-GGCGU----UCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 86208 | 0.76 | 0.163389 |
Target: 5'- gCGUCGGCGCGccgaaccggggcaGCCGGUGCCGC-AGCCg -3' miRNA: 3'- -GCGGCUGCGC-------------CGGCUGCGGCGuUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 53554 | 0.76 | 0.163785 |
Target: 5'- gGCCGcgcCGCGGCCcaGGCgcacuagcgGCCGCGGGCCg -3' miRNA: 3'- gCGGCu--GCGCCGG--CUG---------CGGCGUUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 3374 | 0.76 | 0.163785 |
Target: 5'- gGCCGcgaGCGCGGCCGccaGCCGCGccGGCa -3' miRNA: 3'- gCGGC---UGCGCCGGCug-CGGCGU--UCGg -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 94255 | 0.76 | 0.163785 |
Target: 5'- gGCCacGGCGCaGGgCGGCGCCGCGAGgCu -3' miRNA: 3'- gCGG--CUGCG-CCgGCUGCGGCGUUCgG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 76149 | 0.76 | 0.163785 |
Target: 5'- gGUCGugGCGGCgcaCGACGCCGUGGcGCUg -3' miRNA: 3'- gCGGCugCGCCG---GCUGCGGCGUU-CGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 65651 | 0.76 | 0.163785 |
Target: 5'- uCGCCucuGGCGCGcGCCGGCGC-GCAGcGCCg -3' miRNA: 3'- -GCGG---CUGCGC-CGGCUGCGgCGUU-CGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 55416 | 0.76 | 0.163785 |
Target: 5'- aCGCgCG-CGcCGGCUGGCGCCaccGCGAGCCc -3' miRNA: 3'- -GCG-GCuGC-GCCGGCUGCGG---CGUUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 29695 | 0.76 | 0.163785 |
Target: 5'- cCGCaCGugGCGGCCuGCGUgGCcauGAGCCg -3' miRNA: 3'- -GCG-GCugCGCCGGcUGCGgCG---UUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 3912 | 0.76 | 0.163785 |
Target: 5'- gCGCCcGCGCcGCCGGCGCCggccuccggGUAGGCCa -3' miRNA: 3'- -GCGGcUGCGcCGGCUGCGG---------CGUUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 1308 | 0.76 | 0.167791 |
Target: 5'- uCGCCGGCgGCGGCacgcgcuccggGACGCCGCcgcGCCg -3' miRNA: 3'- -GCGGCUG-CGCCGg----------CUGCGGCGuu-CGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 136917 | 0.76 | 0.170648 |
Target: 5'- gGCCG-CGCGGCCG-CGgCGCAuguggugguacaugGGCCg -3' miRNA: 3'- gCGGCuGCGCCGGCuGCgGCGU--------------UCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 92314 | 0.76 | 0.171886 |
Target: 5'- gCGCCG-CGCGGuCCGcGCGgcccauCCGCGGGCCa -3' miRNA: 3'- -GCGGCuGCGCC-GGC-UGC------GGCGUUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 138024 | 0.76 | 0.171886 |
Target: 5'- aGcCCGGCGCGGcCCGGCGgCGguGGCg -3' miRNA: 3'- gC-GGCUGCGCC-GGCUGCgGCguUCGg -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 353 | 0.76 | 0.171886 |
Target: 5'- aGcCCGGCGCGGcCCGGCGgCGguGGCg -3' miRNA: 3'- gC-GGCUGCGCC-GGCUGCgGCguUCGg -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 102687 | 0.76 | 0.176069 |
Target: 5'- gCGuCCGcCGCGGCCGuCGCUGCc-GCCg -3' miRNA: 3'- -GC-GGCuGCGCCGGCuGCGGCGuuCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 42263 | 0.76 | 0.176069 |
Target: 5'- cCGCgCGAgGCGGCCG-CGCCcaGC-AGCCg -3' miRNA: 3'- -GCG-GCUgCGCCGGCuGCGG--CGuUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 133208 | 0.76 | 0.176069 |
Target: 5'- uCGCCGACGCcGUCGAgGCCGagcugGGGCCc -3' miRNA: 3'- -GCGGCUGCGcCGGCUgCGGCg----UUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 104121 | 0.76 | 0.180343 |
Target: 5'- aGCCG-CGCGGUu--CGCCGCGAGCUc -3' miRNA: 3'- gCGGCuGCGCCGgcuGCGGCGUUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 114344 | 0.76 | 0.180343 |
Target: 5'- gGCuCGA-GCGGCgCGugGCCGC-GGCCg -3' miRNA: 3'- gCG-GCUgCGCCG-GCugCGGCGuUCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home