miRNA display CGI


Results 81 - 100 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 10103 0.66 0.59269
Target:  5'- gCGCCccGGCaGCGGCggCGAcagccaccaccacCGCCGCcauGAGCCa -3'
miRNA:   3'- -GCGG--CUG-CGCCG--GCU-------------GCGGCG---UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 126247 0.66 0.59269
Target:  5'- aGCCGcCGCaGCUc-CGCCGCGuccaagaAGCCg -3'
miRNA:   3'- gCGGCuGCGcCGGcuGCGGCGU-------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 28923 0.66 0.591721
Target:  5'- aCGCCGGgccCGaGGCCGAacugaagcugaaGCCG-AAGCCa -3'
miRNA:   3'- -GCGGCU---GCgCCGGCUg-----------CGGCgUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 4078 0.67 0.583977
Target:  5'- -cCCGACcgGCGGCagCGGCGCCGuCAcGCUc -3'
miRNA:   3'- gcGGCUG--CGCCG--GCUGCGGC-GUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 133896 0.67 0.583977
Target:  5'- aGCC--CGCGGC--GCGCUGCuGGCCu -3'
miRNA:   3'- gCGGcuGCGCCGgcUGCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 136879 0.67 0.583977
Target:  5'- gCGuaGGCGCGGCCGAUGaaGUGuacuGGCg -3'
miRNA:   3'- -GCggCUGCGCCGGCUGCggCGU----UCGg -5'
23850 5' -62.6 NC_005261.1 + 46952 0.67 0.583977
Target:  5'- cCGCgGGCcagucCGcGCCGuCGCCGCu-GCCg -3'
miRNA:   3'- -GCGgCUGc----GC-CGGCuGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 115268 0.67 0.583977
Target:  5'- aCGCCGcCGCGcGUCuggGACGCgGgCAgcAGCCg -3'
miRNA:   3'- -GCGGCuGCGC-CGG---CUGCGgC-GU--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 130516 0.67 0.583977
Target:  5'- gCGCaGGCGCuGGCCGaagcGCGCCcGCucGUCg -3'
miRNA:   3'- -GCGgCUGCG-CCGGC----UGCGG-CGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 119123 0.67 0.583977
Target:  5'- uGuaGGcCGCGGCCG-CGgCGC-GGCCa -3'
miRNA:   3'- gCggCU-GCGCCGGCuGCgGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 43853 0.67 0.583977
Target:  5'- gCGagGACGCGGCCG-CGUCGUccucGGCg -3'
miRNA:   3'- -GCggCUGCGCCGGCuGCGGCGu---UCGg -5'
23850 5' -62.6 NC_005261.1 + 47979 0.67 0.583977
Target:  5'- aCGUCGACcaggGCGaacaCGGCGUCGC-AGCCg -3'
miRNA:   3'- -GCGGCUG----CGCcg--GCUGCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 110928 0.67 0.583977
Target:  5'- uGCCG-CGCuGGgcaCCGAgCGCCGCccggcGGCCc -3'
miRNA:   3'- gCGGCuGCG-CC---GGCU-GCGGCGu----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 49910 0.67 0.583977
Target:  5'- aCGCaGACGUuguGGCCcgccucgaGGCGcCCGCgGAGCCg -3'
miRNA:   3'- -GCGgCUGCG---CCGG--------CUGC-GGCG-UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 111634 0.67 0.583977
Target:  5'- uGCCGcCGCcGcCCGcCGCCGCcucccAGCCc -3'
miRNA:   3'- gCGGCuGCGcC-GGCuGCGGCGu----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 125151 0.67 0.583977
Target:  5'- uCGCCGGCGCcGUgauUGGgGCCGC-GGUCa -3'
miRNA:   3'- -GCGGCUGCGcCG---GCUgCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 83373 0.67 0.583977
Target:  5'- aCGUCGgcgaGCGCGGCgaGCGCgGCcucGGCCg -3'
miRNA:   3'- -GCGGC----UGCGCCGgcUGCGgCGu--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 118011 0.67 0.574326
Target:  5'- gCGCUgGACGCuGUCgGACGCaCGCGGGgCCc -3'
miRNA:   3'- -GCGG-CUGCGcCGG-CUGCG-GCGUUC-GG- -5'
23850 5' -62.6 NC_005261.1 + 77691 0.67 0.574326
Target:  5'- gGCCGggcuACGaCGGCCcccucGAcCGCCGCcccccAGCCa -3'
miRNA:   3'- gCGGC----UGC-GCCGG-----CU-GCGGCGu----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 97697 0.67 0.574326
Target:  5'- uGCCGGgGCGGUggggaGACGgCgGguGGCCc -3'
miRNA:   3'- gCGGCUgCGCCGg----CUGC-GgCguUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.