miRNA display CGI


Results 101 - 120 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 129615 0.67 0.574326
Target:  5'- uCG-CGGCGgGGUCgGGCGCCuuuGCAGGCg -3'
miRNA:   3'- -GCgGCUGCgCCGG-CUGCGG---CGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 109367 0.67 0.574326
Target:  5'- aGCCGcucgaGCGCGGCCcagagGGC-CCGCAcagGGUCc -3'
miRNA:   3'- gCGGC-----UGCGCCGG-----CUGcGGCGU---UCGG- -5'
23850 5' -62.6 NC_005261.1 + 135514 0.67 0.574326
Target:  5'- aGCCGACGaGuGCCuGACGUggUGCAAGUUc -3'
miRNA:   3'- gCGGCUGCgC-CGG-CUGCG--GCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 2516 0.67 0.574326
Target:  5'- gCGCCGcgaccucgggGCGgcaguaGGCCGccaGCGCCGCGGcGCUg -3'
miRNA:   3'- -GCGGC----------UGCg-----CCGGC---UGCGGCGUU-CGG- -5'
23850 5' -62.6 NC_005261.1 + 83199 0.67 0.574326
Target:  5'- aGCUGcCGCGuGaCGugGUCGCAGGUg -3'
miRNA:   3'- gCGGCuGCGC-CgGCugCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 97697 0.67 0.574326
Target:  5'- uGCCGGgGCGGUggggaGACGgCgGguGGCCc -3'
miRNA:   3'- gCGGCUgCGCCGg----CUGC-GgCguUCGG- -5'
23850 5' -62.6 NC_005261.1 + 83754 0.67 0.574326
Target:  5'- uGgCGGCGCgccacGGCCGG-GUCGCAGcGCCc -3'
miRNA:   3'- gCgGCUGCG-----CCGGCUgCGGCGUU-CGG- -5'
23850 5' -62.6 NC_005261.1 + 94602 0.67 0.574326
Target:  5'- cCGCCcacgaGCGCGcGCCcuCGCCGCc-GCCg -3'
miRNA:   3'- -GCGGc----UGCGC-CGGcuGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 15482 0.67 0.574326
Target:  5'- gGCgGACaCGcGCCGcuCGCUGCGGGCg -3'
miRNA:   3'- gCGgCUGcGC-CGGCu-GCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 2815 0.67 0.574326
Target:  5'- gGCCGG-GCGGCCccaGCC-CGAGCUc -3'
miRNA:   3'- gCGGCUgCGCCGGcugCGGcGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 131554 0.67 0.574326
Target:  5'- --aCGugGCGGUCGcCGUCGCccGGCUg -3'
miRNA:   3'- gcgGCugCGCCGGCuGCGGCGu-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 30545 0.67 0.574326
Target:  5'- gGaCGAgGaagaGGCCGcCGCCGCcgGGGCCu -3'
miRNA:   3'- gCgGCUgCg---CCGGCuGCGGCG--UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 118011 0.67 0.574326
Target:  5'- gCGCUgGACGCuGUCgGACGCaCGCGGGgCCc -3'
miRNA:   3'- -GCGG-CUGCGcCGG-CUGCG-GCGUUC-GG- -5'
23850 5' -62.6 NC_005261.1 + 50946 0.67 0.574326
Target:  5'- uGCUucuACGCGGCCGugGUCGacuacGGCg -3'
miRNA:   3'- gCGGc--UGCGCCGGCugCGGCgu---UCGg -5'
23850 5' -62.6 NC_005261.1 + 103674 0.67 0.574326
Target:  5'- aCGCCcGCGaGGCCGAgCGCcCGUuuauagcGGCCa -3'
miRNA:   3'- -GCGGcUGCgCCGGCU-GCG-GCGu------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 48251 0.67 0.573363
Target:  5'- cCGCagcGCGgGGCCaaugcaaggcgggGACGCgCGCAAGCg -3'
miRNA:   3'- -GCGgc-UGCgCCGG-------------CUGCG-GCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 89279 0.67 0.573363
Target:  5'- gGCUGGCguucccgGCGGCCGccaACGCCG-AGGaCCu -3'
miRNA:   3'- gCGGCUG-------CGCCGGC---UGCGGCgUUC-GG- -5'
23850 5' -62.6 NC_005261.1 + 18109 0.67 0.564712
Target:  5'- aCGUCGACuucgacgaGCGGgggGAagcaGCCGCAGGCCc -3'
miRNA:   3'- -GCGGCUG--------CGCCgg-CUg---CGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 90221 0.67 0.564712
Target:  5'- gCGCCcucGCGCGGCgGgcgggcGCGCCGuCGGGUa -3'
miRNA:   3'- -GCGGc--UGCGCCGgC------UGCGGC-GUUCGg -5'
23850 5' -62.6 NC_005261.1 + 59257 0.67 0.564712
Target:  5'- gCGCCGGCGCcacgcgucgcacGGCgUGuCGCCGCccAGCa -3'
miRNA:   3'- -GCGGCUGCG------------CCG-GCuGCGGCGu-UCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.