miRNA display CGI


Results 61 - 80 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 9988 0.72 0.286698
Target:  5'- gCGCCucGGCGCGGCC-AC-CCGCuuGCCa -3'
miRNA:   3'- -GCGG--CUGCGCCGGcUGcGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 10103 0.66 0.59269
Target:  5'- gCGCCccGGCaGCGGCggCGAcagccaccaccacCGCCGCcauGAGCCa -3'
miRNA:   3'- -GCGG--CUG-CGCCG--GCU-------------GCGGCG---UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 10240 0.7 0.411454
Target:  5'- gGCCcGCGCacUCGcCGCCGCGGGCCu -3'
miRNA:   3'- gCGGcUGCGccGGCuGCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 10368 0.71 0.348736
Target:  5'- gGCCGacacGCGCGcGCUG-CGCCGCGcGCUc -3'
miRNA:   3'- gCGGC----UGCGC-CGGCuGCGGCGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 10489 0.82 0.064736
Target:  5'- cCGCUGcaccggcuuuugcGCGCGGCCGcCGCUGCGGGCCc -3'
miRNA:   3'- -GCGGC-------------UGCGCCGGCuGCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 10682 0.68 0.498892
Target:  5'- cCGCCGuccccuCcCGGCaaaGGCGuUCGCGGGCCg -3'
miRNA:   3'- -GCGGCu-----GcGCCGg--CUGC-GGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 10901 0.73 0.262046
Target:  5'- aCGgCGGCgGCGGCagCGcCGCCGCcGGCCg -3'
miRNA:   3'- -GCgGCUG-CGCCG--GCuGCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 11218 0.69 0.445324
Target:  5'- aCGCCG-CGUGGCCcc--CCGCGGGCg -3'
miRNA:   3'- -GCGGCuGCGCCGGcugcGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 11890 0.74 0.217943
Target:  5'- cCGcCCGcACGCGcGCC--CGCCGCGGGCCc -3'
miRNA:   3'- -GC-GGC-UGCGC-CGGcuGCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 11924 0.77 0.14116
Target:  5'- gGCCGGCggcugcgGCGGCCcGCGCCGCGgcGGCUc -3'
miRNA:   3'- gCGGCUG-------CGCCGGcUGCGGCGU--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 12087 0.74 0.239146
Target:  5'- gCGCCGGgGCGGCUcaaaGGCGCgGCGccAGCUc -3'
miRNA:   3'- -GCGGCUgCGCCGG----CUGCGgCGU--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 12138 0.77 0.145017
Target:  5'- cCGCCGcCGCGGCgGcCG-CGCAGGCCc -3'
miRNA:   3'- -GCGGCuGCGCCGgCuGCgGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 12202 0.73 0.262046
Target:  5'- gCGCCGcCGCcgguGCCGcCGCCGCugcuGCCg -3'
miRNA:   3'- -GCGGCuGCGc---CGGCuGCGGCGuu--CGG- -5'
23850 5' -62.6 NC_005261.1 + 12340 0.89 0.020695
Target:  5'- gGCCGGCGCGGCCGcCGCCGCGgcGGCa -3'
miRNA:   3'- gCGGCUGCGCCGGCuGCGGCGU--UCGg -5'
23850 5' -62.6 NC_005261.1 + 12515 0.68 0.498892
Target:  5'- gCGaCCGcGCGgGGCCccGCGCCGCc-GCCg -3'
miRNA:   3'- -GC-GGC-UGCgCCGGc-UGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 12637 0.74 0.228336
Target:  5'- aGuCCGGCGCGGuCUGGgGCCGCGccGGCg -3'
miRNA:   3'- gC-GGCUGCGCC-GGCUgCGGCGU--UCGg -5'
23850 5' -62.6 NC_005261.1 + 12709 0.68 0.489756
Target:  5'- aGcCCGA-GCGGCUcgGGCG-CGCGGGCCc -3'
miRNA:   3'- gC-GGCUgCGCCGG--CUGCgGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 12735 0.66 0.612122
Target:  5'- cCGCCGGCccccuggGCGGgcCCGGCgagGUCGUAGGCg -3'
miRNA:   3'- -GCGGCUG-------CGCC--GGCUG---CGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 12789 0.66 0.59366
Target:  5'- uCGUCGGCGagcucgucGUCGGCGUCGCu-GCCg -3'
miRNA:   3'- -GCGGCUGCgc------CGGCUGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 12958 0.69 0.444459
Target:  5'- cCGCgCGGCGCGcGCaccccaGACagcgaggGCCGCGAcGCCg -3'
miRNA:   3'- -GCG-GCUGCGC-CGg-----CUG-------CGGCGUU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.