miRNA display CGI


Results 81 - 100 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 13053 0.69 0.471723
Target:  5'- gGCCGcGCGCGccccuGCCGggcGCGuCCGCcGGCCc -3'
miRNA:   3'- gCGGC-UGCGC-----CGGC---UGC-GGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 13226 0.68 0.526735
Target:  5'- aCGaaGACGUagagccccgaGGCCGAgGCCgGCGcGCCg -3'
miRNA:   3'- -GCggCUGCG----------CCGGCUgCGG-CGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 13340 0.66 0.629659
Target:  5'- uCGCgCGGCcaGCGGUCGGCGgaggcugggcggcaCCGCucguacAGCCg -3'
miRNA:   3'- -GCG-GCUG--CGCCGGCUGC--------------GGCGu-----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 13436 0.66 0.622836
Target:  5'- gCGUCGACcgggugcagGCaGGCCGGCGCCuCGGGgUg -3'
miRNA:   3'- -GCGGCUG---------CG-CCGGCUGCGGcGUUCgG- -5'
23850 5' -62.6 NC_005261.1 + 13643 0.69 0.462834
Target:  5'- aCGCgGaaGCGCGcGCCG-UGCCGCc-GCCg -3'
miRNA:   3'- -GCGgC--UGCGC-CGGCuGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 13811 0.69 0.454033
Target:  5'- gCGUCGGC-CGGCuCGAC-CCGCAGcGUCa -3'
miRNA:   3'- -GCGGCUGcGCCG-GCUGcGGCGUU-CGG- -5'
23850 5' -62.6 NC_005261.1 + 13840 0.69 0.428191
Target:  5'- gGUCGACuGCGucuccucgucGCCGGCGUCGCcggcGGCCc -3'
miRNA:   3'- gCGGCUG-CGC----------CGGCUGCGGCGu---UCGG- -5'
23850 5' -62.6 NC_005261.1 + 14285 0.66 0.59366
Target:  5'- gGCUGGgGCcaaGGCCGGCcccgaCCGguAGCCc -3'
miRNA:   3'- gCGGCUgCG---CCGGCUGc----GGCguUCGG- -5'
23850 5' -62.6 NC_005261.1 + 14368 0.73 0.268043
Target:  5'- gGCCGGgGCGGCgCgGugGCCcGCAucGCCa -3'
miRNA:   3'- gCGGCUgCGCCG-G-CugCGG-CGUu-CGG- -5'
23850 5' -62.6 NC_005261.1 + 14534 0.67 0.555141
Target:  5'- gCGgUGGCGCGGCCGcccggcgaccACGCCuuucGUAcGGCCc -3'
miRNA:   3'- -GCgGCUGCGCCGGC----------UGCGG----CGU-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 14732 0.66 0.603368
Target:  5'- gCGUcaCGACgGUGGCaggggcgauCGGCGCCGCGccgcgacaggggGGCCg -3'
miRNA:   3'- -GCG--GCUG-CGCCG---------GCUGCGGCGU------------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 14812 0.66 0.613096
Target:  5'- gCGCaCGucCGCGGCUuauagauGCGCCGgGAGCa -3'
miRNA:   3'- -GCG-GCu-GCGCCGGc------UGCGGCgUUCGg -5'
23850 5' -62.6 NC_005261.1 + 14935 0.67 0.564712
Target:  5'- -aUCGACGCcaGCUGGCGCUGgAAGCg -3'
miRNA:   3'- gcGGCUGCGc-CGGCUGCGGCgUUCGg -5'
23850 5' -62.6 NC_005261.1 + 14987 0.67 0.545618
Target:  5'- gGCCG-CGcCGGCCG-CGCCcgGAGCg -3'
miRNA:   3'- gCGGCuGC-GCCGGCuGCGGcgUUCGg -5'
23850 5' -62.6 NC_005261.1 + 15232 0.71 0.32704
Target:  5'- aGCCGGCGUugaGGCCc-CGCuCGCAgugGGCCg -3'
miRNA:   3'- gCGGCUGCG---CCGGcuGCG-GCGU---UCGG- -5'
23850 5' -62.6 NC_005261.1 + 15273 0.69 0.419772
Target:  5'- cCGgCGGCGCcGCCGGgGCgCGCGgucgcGGCCu -3'
miRNA:   3'- -GCgGCUGCGcCGGCUgCG-GCGU-----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 15393 0.71 0.356192
Target:  5'- cCGCCGuCGauGCCGACGC-GCAgaaaguagAGCCc -3'
miRNA:   3'- -GCGGCuGCgcCGGCUGCGgCGU--------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 15482 0.67 0.574326
Target:  5'- gGCgGACaCGcGCCGcuCGCUGCGGGCg -3'
miRNA:   3'- gCGgCUGcGC-CGGCu-GCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 15730 0.79 0.11326
Target:  5'- aCG-CGACGgGGCCGucCGCgCGCAGGCCg -3'
miRNA:   3'- -GCgGCUGCgCCGGCu-GCG-GCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 15793 0.78 0.122036
Target:  5'- gCGCCGcccGCGCGGCCaGCGCCGCcacccagaaGAGCa -3'
miRNA:   3'- -GCGGC---UGCGCCGGcUGCGGCG---------UUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.