miRNA display CGI


Results 101 - 120 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 15886 0.72 0.297716
Target:  5'- uCGCCGACGC-GCgGGCGCuuuaucucccgcccCGCGcAGCCg -3'
miRNA:   3'- -GCGGCUGCGcCGgCUGCG--------------GCGU-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 16104 0.69 0.419772
Target:  5'- -aCCGGCgGCGGCC-ACGCaCGCGaucaccgcGGCCg -3'
miRNA:   3'- gcGGCUG-CGCCGGcUGCG-GCGU--------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 16178 0.68 0.489756
Target:  5'- gCGCgGGCGUGGCggggGugGgCGgGGGCCg -3'
miRNA:   3'- -GCGgCUGCGCCGg---CugCgGCgUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 16232 0.75 0.189166
Target:  5'- aGCCcucGGgGCGGUCGACGuCCGCGccggGGCCg -3'
miRNA:   3'- gCGG---CUgCGCCGGCUGC-GGCGU----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 16297 0.69 0.419772
Target:  5'- gCGCCGucgggcccaGCgGCGGCCGGgcccucccccuCGCCGCcGGUCu -3'
miRNA:   3'- -GCGGC---------UG-CGCCGGCU-----------GCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 16699 0.69 0.454033
Target:  5'- gCGCCGucgauguacaGCGCGcGCCGGuacugGCCcucgGCGAGCCg -3'
miRNA:   3'- -GCGGC----------UGCGC-CGGCUg----CGG----CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 17014 0.73 0.27415
Target:  5'- uGUCGcACGCGGCCGcgcuCGUCGCGuAGCg -3'
miRNA:   3'- gCGGC-UGCGCCGGCu---GCGGCGU-UCGg -5'
23850 5' -62.6 NC_005261.1 + 17140 0.7 0.369123
Target:  5'- aCGCCGGCG-GGUCGACGuagaccgucacCCGCGgcgcgggcgugggcAGCCc -3'
miRNA:   3'- -GCGGCUGCgCCGGCUGC-----------GGCGU--------------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 17290 0.7 0.371438
Target:  5'- cCGcCCGACGaggcuauauaccCGGCCGGgGUCGCGgcccGGCCc -3'
miRNA:   3'- -GC-GGCUGC------------GCCGGCUgCGGCGU----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 17560 0.68 0.508103
Target:  5'- cCGCCGuu-CGGCgGugGCCuugcggGCGAGCUg -3'
miRNA:   3'- -GCGGCugcGCCGgCugCGG------CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 17668 0.68 0.498892
Target:  5'- gCGCCG-CGUGGCgGGaucaGUgGgCAAGCCa -3'
miRNA:   3'- -GCGGCuGCGCCGgCUg---CGgC-GUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 17854 0.72 0.299694
Target:  5'- gGCCucguaagaGCGGCCGGC-CgGCAGGCCa -3'
miRNA:   3'- gCGGcug-----CGCCGGCUGcGgCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 18109 0.67 0.564712
Target:  5'- aCGUCGACuucgacgaGCGGgggGAagcaGCCGCAGGCCc -3'
miRNA:   3'- -GCGGCUG--------CGCCgg-CUg---CGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 18614 0.71 0.348736
Target:  5'- cCGUCG-CGCGcGCCGAaauCCGCGAGgCCa -3'
miRNA:   3'- -GCGGCuGCGC-CGGCUgc-GGCGUUC-GG- -5'
23850 5' -62.6 NC_005261.1 + 19187 0.67 0.536148
Target:  5'- uGCCgGGCGCaGUCGccuuCGCC-CAGGCCc -3'
miRNA:   3'- gCGG-CUGCGcCGGCu---GCGGcGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 19761 0.66 0.622836
Target:  5'- gCGCgGGCGCGGgccCCGucgccucgaacACGCgGCccuccGAGCCg -3'
miRNA:   3'- -GCGgCUGCGCC---GGC-----------UGCGgCG-----UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 19877 0.69 0.43671
Target:  5'- cCGCCGGCG-GGcCCGuCGUCGCcccAGUCg -3'
miRNA:   3'- -GCGGCUGCgCC-GGCuGCGGCGu--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 20106 0.67 0.555141
Target:  5'- gGCUucCGCGGCaaGGCG-CGCGGGCCc -3'
miRNA:   3'- gCGGcuGCGCCGg-CUGCgGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 20159 0.68 0.508103
Target:  5'- gCGCCGGCucucugcuCGGCUc-CGCCGCAAGgCa -3'
miRNA:   3'- -GCGGCUGc-------GCCGGcuGCGGCGUUCgG- -5'
23850 5' -62.6 NC_005261.1 + 20346 0.73 0.244709
Target:  5'- aCGCC--CGCGGCU---GCCGCGAGCCg -3'
miRNA:   3'- -GCGGcuGCGCCGGcugCGGCGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.