miRNA display CGI


Results 121 - 140 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 20571 0.68 0.498892
Target:  5'- gCGCagCGGCGcCGG-CGGCGCgGguGGCCu -3'
miRNA:   3'- -GCG--GCUGC-GCCgGCUGCGgCguUCGG- -5'
23850 5' -62.6 NC_005261.1 + 20851 0.8 0.092664
Target:  5'- gGCagCGugGCGGCUcuuGCGCCGCGGGCCg -3'
miRNA:   3'- gCG--GCugCGCCGGc--UGCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 20969 0.68 0.48703
Target:  5'- uCGUgGAcCGCGGCgCGGCGCCcuacccccuuagacGCGcGCCu -3'
miRNA:   3'- -GCGgCU-GCGCCG-GCUGCGG--------------CGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 21183 0.71 0.341391
Target:  5'- aGCCGcuggcgcgaGCGCGGCCG-CGgaCGCuGGCCc -3'
miRNA:   3'- gCGGC---------UGCGCCGGCuGCg-GCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 21380 0.71 0.341391
Target:  5'- gCGCCGgagGCGCGGUccacuuugagugCGuucccGCGCCGCGccGGCCg -3'
miRNA:   3'- -GCGGC---UGCGCCG------------GC-----UGCGGCGU--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 21638 0.71 0.32704
Target:  5'- cCGCCccGGCGCGgacGCCGcUGCCGCAccGCCg -3'
miRNA:   3'- -GCGG--CUGCGC---CGGCuGCGGCGUu-CGG- -5'
23850 5' -62.6 NC_005261.1 + 21734 0.7 0.411454
Target:  5'- aGCCGAucgacaCGCGGCUGcuGCGCCuggagcGCGcGCCg -3'
miRNA:   3'- gCGGCU------GCGCCGGC--UGCGG------CGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 21779 0.8 0.09503
Target:  5'- aGCCGcCGCGGCgCGGgcCGCCGC-AGCCg -3'
miRNA:   3'- gCGGCuGCGCCG-GCU--GCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 21815 0.73 0.25038
Target:  5'- gGCCGGgccCGCGGCgGGCGCgcgUGCGGGCg -3'
miRNA:   3'- gCGGCU---GCGCCGgCUGCG---GCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 22071 0.68 0.489756
Target:  5'- -uCCGGCGgGGCUcgagggGGCGCCGCGugggGGCg -3'
miRNA:   3'- gcGGCUGCgCCGG------CUGCGGCGU----UCGg -5'
23850 5' -62.6 NC_005261.1 + 22535 0.66 0.603368
Target:  5'- aCG-CGACGgagGGCCGGgGCCGC-GGCg -3'
miRNA:   3'- -GCgGCUGCg--CCGGCUgCGGCGuUCGg -5'
23850 5' -62.6 NC_005261.1 + 22588 0.66 0.613096
Target:  5'- gGCgGAgGCGGCgcACGCUGCcGGCg -3'
miRNA:   3'- gCGgCUgCGCCGgcUGCGGCGuUCGg -5'
23850 5' -62.6 NC_005261.1 + 22655 0.66 0.613096
Target:  5'- gCGCUGGCGgcgccUGGgCGGCGCC-CGAGUg -3'
miRNA:   3'- -GCGGCUGC-----GCCgGCUGCGGcGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 22807 0.72 0.286698
Target:  5'- gGCCGGCgGCGGCgcUGcCGCCGCc-GCCg -3'
miRNA:   3'- gCGGCUG-CGCCG--GCuGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 23199 0.7 0.391913
Target:  5'- gCGCCGcggggcccgcaGCgGCGGCCGcGCGCaaaagccggugcaGCGGGCCg -3'
miRNA:   3'- -GCGGC-----------UG-CGCCGGC-UGCGg------------CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 23331 0.7 0.379227
Target:  5'- aGCCGacgagcGCGCGGCgCaGCGCgCGCGugucGGCCg -3'
miRNA:   3'- gCGGC------UGCGCCG-GcUGCG-GCGU----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 23465 0.67 0.555141
Target:  5'- gCGCCaGGCccGCGG-CGGCGagugCGCGGGCCc -3'
miRNA:   3'- -GCGG-CUG--CGCCgGCUGCg---GCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 23599 0.73 0.268043
Target:  5'- gGUgGugGUGGCUGuCGCCGCcgcuGCCg -3'
miRNA:   3'- gCGgCugCGCCGGCuGCGGCGuu--CGG- -5'
23850 5' -62.6 NC_005261.1 + 23737 0.67 0.545618
Target:  5'- gCGCCGAgGCGcGuCCGGgaggggcgggcuUGCCccggGCGGGCCg -3'
miRNA:   3'- -GCGGCUgCGC-C-GGCU------------GCGG----CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 23795 0.73 0.244709
Target:  5'- uCGCCGGgGCaGGCCGGCuggggcgggcuuGCCccggGCGGGCCg -3'
miRNA:   3'- -GCGGCUgCG-CCGGCUG------------CGG----CGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.