miRNA display CGI


Results 41 - 60 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 132138 0.71 0.337039
Target:  5'- gGCUGACcgcccuccuccucgaGCGcGCCGcCGCUGCAGGCa -3'
miRNA:   3'- gCGGCUG---------------CGC-CGGCuGCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 132067 0.8 0.083747
Target:  5'- gGCCGAgguCGCGGCCGccguCGCCGCu-GCCg -3'
miRNA:   3'- gCGGCU---GCGCCGGCu---GCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 131877 0.72 0.313141
Target:  5'- aGCUG--GCGGCCGcCGCCGCAcGCg -3'
miRNA:   3'- gCGGCugCGCCGGCuGCGGCGUuCGg -5'
23850 5' -62.6 NC_005261.1 + 131764 0.85 0.038729
Target:  5'- gGCCGGCGCGGCgGgcGCGCCGCuGGGCCc -3'
miRNA:   3'- gCGGCUGCGCCGgC--UGCGGCG-UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 131612 0.66 0.612122
Target:  5'- gCGCaCGuACGCGcGCCuGGCGCCcGCcgcgaggaccgacGGGCCc -3'
miRNA:   3'- -GCG-GC-UGCGC-CGG-CUGCGG-CG-------------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 131554 0.67 0.574326
Target:  5'- --aCGugGCGGUCGcCGUCGCccGGCUg -3'
miRNA:   3'- gcgGCugCGCCGGCuGCGGCGu-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 131434 0.7 0.395128
Target:  5'- gCGCCGGCGCcccccuugcGCCG-CGCCucGCGGGCg -3'
miRNA:   3'- -GCGGCUGCGc--------CGGCuGCGG--CGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 131191 0.75 0.198367
Target:  5'- aCGCCcgcGGCGCGGUCGcCGCCgGCGcGCCc -3'
miRNA:   3'- -GCGG---CUGCGCCGGCuGCGG-CGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 131033 0.74 0.237498
Target:  5'- gGCCGAgCGCGccGgCGACGCCGCcaccuacgaccugcAGGCCg -3'
miRNA:   3'- gCGGCU-GCGC--CgGCUGCGGCG--------------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 130853 0.73 0.27415
Target:  5'- gCGCgCG-CGCccGGCCgGGCGCCGCGgccuGGCCu -3'
miRNA:   3'- -GCG-GCuGCG--CCGG-CUGCGGCGU----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 130794 0.69 0.418936
Target:  5'- gGCCGcacCGCGGaCGACGCCcaauacgucgaggGCcAGGCCa -3'
miRNA:   3'- gCGGCu--GCGCCgGCUGCGG-------------CG-UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 130655 0.67 0.536148
Target:  5'- uCGCCGACGC-GCUG-CuCCucgGCGAGCCc -3'
miRNA:   3'- -GCGGCUGCGcCGGCuGcGG---CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 130583 0.72 0.313141
Target:  5'- gCGCCGccGCGCGGCCccGCGCCu--GGCCc -3'
miRNA:   3'- -GCGGC--UGCGCCGGc-UGCGGcguUCGG- -5'
23850 5' -62.6 NC_005261.1 + 130516 0.67 0.583977
Target:  5'- gCGCaGGCGCuGGCCGaagcGCGCCcGCucGUCg -3'
miRNA:   3'- -GCGgCUGCG-CCGGC----UGCGG-CGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 130325 0.69 0.428191
Target:  5'- gCGCCaugGACGgccCGGCCGcgcucggggacGCGCUGCGGGUCc -3'
miRNA:   3'- -GCGG---CUGC---GCCGGC-----------UGCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 130118 0.67 0.536148
Target:  5'- gCGCCuuGGCGagccGCCGcGCGCCGUccGCCg -3'
miRNA:   3'- -GCGG--CUGCgc--CGGC-UGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 129723 0.67 0.564712
Target:  5'- cCGCCGGCugcaGCGGCagGGCGgCG-GGGCCc -3'
miRNA:   3'- -GCGGCUG----CGCCGg-CUGCgGCgUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 129697 0.68 0.508103
Target:  5'- gGCCGG---GGCCGGgGCCggagGCAGGCCc -3'
miRNA:   3'- gCGGCUgcgCCGGCUgCGG----CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 129615 0.67 0.574326
Target:  5'- uCG-CGGCGgGGUCgGGCGCCuuuGCAGGCg -3'
miRNA:   3'- -GCgGCUGCgCCGG-CUGCGG---CGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 129565 0.71 0.341391
Target:  5'- gGCgGGCguagaggaggagGCGGCCGcGCGCCGCGGGaCa -3'
miRNA:   3'- gCGgCUG------------CGCCGGC-UGCGGCGUUCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.