miRNA display CGI


Results 61 - 80 of 1000 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 129533 0.66 0.622836
Target:  5'- aGgCG-CGCGGgCuACGCCGCAAGgUg -3'
miRNA:   3'- gCgGCuGCGCCgGcUGCGGCGUUCgG- -5'
23850 5' -62.6 NC_005261.1 + 129309 0.72 0.320034
Target:  5'- gCGCCccGCGCcugcGCUGGCGCCGCGucGCCg -3'
miRNA:   3'- -GCGGc-UGCGc---CGGCUGCGGCGUu-CGG- -5'
23850 5' -62.6 NC_005261.1 + 129034 0.72 0.306361
Target:  5'- aGCCuACGCGGCaGACGCCcacGCu-GCCg -3'
miRNA:   3'- gCGGcUGCGCCGgCUGCGG---CGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 128875 0.68 0.526735
Target:  5'- uGCCGACGacgaGGCgGGgGCCgggugggagGCGGGCg -3'
miRNA:   3'- gCGGCUGCg---CCGgCUgCGG---------CGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 128817 0.72 0.299694
Target:  5'- gGCuCGcGCuGCGGCUGACGCuCGCGcggcuGGCCg -3'
miRNA:   3'- gCG-GC-UG-CGCCGGCUGCG-GCGU-----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 128143 0.74 0.212899
Target:  5'- aGgCGACGgucGCCGGgGCCGCGGGCCu -3'
miRNA:   3'- gCgGCUGCgc-CGGCUgCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 128103 0.66 0.613096
Target:  5'- gGCgagCGGCGCGGCgCGGgGUCG--GGCCg -3'
miRNA:   3'- gCG---GCUGCGCCG-GCUgCGGCguUCGG- -5'
23850 5' -62.6 NC_005261.1 + 127888 0.69 0.462834
Target:  5'- gCGCCGGCGCccGUCGG-GCC-CGGGCCu -3'
miRNA:   3'- -GCGGCUGCGc-CGGCUgCGGcGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 127779 0.78 0.124789
Target:  5'- aCGCCcggcugcucgagcGGCG-GGCCGGCGCCGCGgcggcgGGCCg -3'
miRNA:   3'- -GCGG-------------CUGCgCCGGCUGCGGCGU------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 127611 0.7 0.403239
Target:  5'- gCGCUGAacgcuaGCGGCCGGCcggacgcgacgGCgGCGGcGCCg -3'
miRNA:   3'- -GCGGCUg-----CGCCGGCUG-----------CGgCGUU-CGG- -5'
23850 5' -62.6 NC_005261.1 + 127361 0.66 0.59269
Target:  5'- gGCCcGCGUGGCUagGAUGUCGUuggcggcggcgagGAGCCc -3'
miRNA:   3'- gCGGcUGCGCCGG--CUGCGGCG-------------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 127305 0.7 0.403239
Target:  5'- cCGCCGGCugGCGGUgGGgcccUGCCGCccgcggGGGCCg -3'
miRNA:   3'- -GCGGCUG--CGCCGgCU----GCGGCG------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 127213 0.66 0.632583
Target:  5'- aGCgGcGCGCGGCUuaaGCCGCGcgcgucgaaaaAGCCu -3'
miRNA:   3'- gCGgC-UGCGCCGGcugCGGCGU-----------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 126993 0.72 0.313141
Target:  5'- gGaCCGucaGgGGCCGAcccCGCCGCAGGCg -3'
miRNA:   3'- gC-GGCug-CgCCGGCU---GCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 126936 0.66 0.59366
Target:  5'- aGCa-GCGCGGCCaggGGCGCCGgGcGCg -3'
miRNA:   3'- gCGgcUGCGCCGG---CUGCGGCgUuCGg -5'
23850 5' -62.6 NC_005261.1 + 126536 0.66 0.59366
Target:  5'- cCGCCG-CGCcucGGCCacGCGCCGCc-GUCg -3'
miRNA:   3'- -GCGGCuGCG---CCGGc-UGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 126247 0.66 0.59269
Target:  5'- aGCCGcCGCaGCUc-CGCCGCGuccaagaAGCCg -3'
miRNA:   3'- gCGGCuGCGcCGGcuGCGGCGU-------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 126205 0.68 0.517386
Target:  5'- gCGCgGACcaGCGGCagccccagcuccCGACGCCGguAGUUu -3'
miRNA:   3'- -GCGgCUG--CGCCG------------GCUGCGGCguUCGG- -5'
23850 5' -62.6 NC_005261.1 + 126028 0.7 0.387124
Target:  5'- gCGCCG-CGCGGCCGcGCGuacgagugcucCCGCuccggcGCCa -3'
miRNA:   3'- -GCGGCuGCGCCGGC-UGC-----------GGCGuu----CGG- -5'
23850 5' -62.6 NC_005261.1 + 125874 0.7 0.408155
Target:  5'- gGCCGGgGCGGCgcccuuggcugaaGGCGCC-UGAGCCa -3'
miRNA:   3'- gCGGCUgCGCCGg------------CUGCGGcGUUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.