miRNA display CGI


Results 81 - 100 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 125819 0.72 0.299694
Target:  5'- cCGCCGcgaGCGgGGCCGGaccggGCUuuGCAAGCCc -3'
miRNA:   3'- -GCGGC---UGCgCCGGCUg----CGG--CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 125721 0.73 0.25038
Target:  5'- cCGCgGGCuCGGCUGGggcCGCCGCAagggGGCCg -3'
miRNA:   3'- -GCGgCUGcGCCGGCU---GCGGCGU----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 125535 0.68 0.489756
Target:  5'- gCGCCGccCGCaGGgCGGCGCCagAGGCCu -3'
miRNA:   3'- -GCGGCu-GCG-CCgGCUGCGGcgUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 125413 0.73 0.244709
Target:  5'- aG-CGGCGCGGgCGGCGCU-CAGGCCg -3'
miRNA:   3'- gCgGCUGCGCCgGCUGCGGcGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 125303 0.71 0.361478
Target:  5'- gCGCCGGacccgcgggcgcucCGCGGCCucGGCGuCCGCAGcGCg -3'
miRNA:   3'- -GCGGCU--------------GCGCCGG--CUGC-GGCGUU-CGg -5'
23850 5' -62.6 NC_005261.1 + 125151 0.67 0.583977
Target:  5'- uCGCCGGCGCcGUgauUGGgGCCGC-GGUCa -3'
miRNA:   3'- -GCGGCUGCGcCG---GCUgCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 124937 0.74 0.212899
Target:  5'- cCGCCGcGCGCGcuguGCCGGCGCCcugGAGCCc -3'
miRNA:   3'- -GCGGC-UGCGC----CGGCUGCGGcg-UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 124241 0.78 0.131439
Target:  5'- cCGCCGcCGCGGgCaGGCGCCGCGcggcGCCg -3'
miRNA:   3'- -GCGGCuGCGCCgG-CUGCGGCGUu---CGG- -5'
23850 5' -62.6 NC_005261.1 + 124074 0.71 0.33921
Target:  5'- gGCCGACuGCaGcCCGGCGCCcGCGuagcgcgcgcacagGGCCg -3'
miRNA:   3'- gCGGCUG-CGcC-GGCUGCGG-CGU--------------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 123729 0.72 0.286698
Target:  5'- gCGUCGuCGCGGuCCGcacCGCCaGUAGGCCu -3'
miRNA:   3'- -GCGGCuGCGCC-GGCu--GCGG-CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 123411 0.68 0.489756
Target:  5'- uGCCGGCcaGgGGCgGGCucgccacggGCCGC-AGCCg -3'
miRNA:   3'- gCGGCUG--CgCCGgCUG---------CGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 123210 0.73 0.25038
Target:  5'- cCGCCGcguaaGCGCGGCC--UGCCGCcuagcGGCCg -3'
miRNA:   3'- -GCGGC-----UGCGCCGGcuGCGGCGu----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 123075 0.68 0.517386
Target:  5'- gGCCccgaGAgGCGGCCGGCcacgccauuucGCCGC-GGCg -3'
miRNA:   3'- gCGG----CUgCGCCGGCUG-----------CGGCGuUCGg -5'
23850 5' -62.6 NC_005261.1 + 123001 0.73 0.262046
Target:  5'- gGCCacuacGGcCGCGGCCGugGCgucCGCGAGCg -3'
miRNA:   3'- gCGG-----CU-GCGCCGGCugCG---GCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 122927 0.72 0.286698
Target:  5'- aCGCCGagcaGCGCGGCCGcGCGCUcaaccccaaacaGCGGGgCCc -3'
miRNA:   3'- -GCGGC----UGCGCCGGC-UGCGG------------CGUUC-GG- -5'
23850 5' -62.6 NC_005261.1 + 122775 0.69 0.435853
Target:  5'- aGCCGAugacCGCGcGCCaGACGgCGUccuuagaGAGCCg -3'
miRNA:   3'- gCGGCU----GCGC-CGG-CUGCgGCG-------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 122712 0.72 0.304349
Target:  5'- cCGCCGGcCGCGccgucgauguucacGUCGGCGCCGCucgAGGCUu -3'
miRNA:   3'- -GCGGCU-GCGC--------------CGGCUGCGGCG---UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 122587 0.72 0.299694
Target:  5'- cCGCCG-CaGCGGCCuuguACGCCGCGuugucguGCCu -3'
miRNA:   3'- -GCGGCuG-CGCCGGc---UGCGGCGUu------CGG- -5'
23850 5' -62.6 NC_005261.1 + 122451 0.67 0.545618
Target:  5'- aGCCaGCGguaGGCCGugGCaGCGuacGCCa -3'
miRNA:   3'- gCGGcUGCg--CCGGCugCGgCGUu--CGG- -5'
23850 5' -62.6 NC_005261.1 + 122361 0.66 0.626735
Target:  5'- gGCCGcggcucGCGCGGCCccaccgcggccugggGGCGCUuGcCAAGCUu -3'
miRNA:   3'- gCGGC------UGCGCCGG---------------CUGCGG-C-GUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.