miRNA display CGI


Results 101 - 120 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 122279 0.75 0.198367
Target:  5'- gGCCGuuagcaucaGCGCGGCCccgcUGCCGCAGGCg -3'
miRNA:   3'- gCGGC---------UGCGCCGGcu--GCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 122240 0.7 0.371438
Target:  5'- -cCCGACGCgcaucagcagGGCCaGCGCCGCc-GCCg -3'
miRNA:   3'- gcGGCUGCG----------CCGGcUGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 122143 0.68 0.480699
Target:  5'- gGUgGugGUgcacGGCCGACGCCaGCucgaccgcGGCCa -3'
miRNA:   3'- gCGgCugCG----CCGGCUGCGG-CGu-------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 121831 0.74 0.233149
Target:  5'- gGCCGcCGCGGCggcgcacCGGCGCCaGCA-GCCc -3'
miRNA:   3'- gCGGCuGCGCCG-------GCUGCGG-CGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 121765 0.71 0.356192
Target:  5'- aGCCcgaGCGCGGUgggGugGCCGC-GGCCg -3'
miRNA:   3'- gCGGc--UGCGCCGg--CugCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 121629 0.77 0.148606
Target:  5'- cCGCCGcucgGCGGCCGcCGCCgGCGAGCg -3'
miRNA:   3'- -GCGGCug--CGCCGGCuGCGG-CGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 121383 0.66 0.603368
Target:  5'- gCGCCc-CGCGG-CGGCGgCGCcuGCCc -3'
miRNA:   3'- -GCGGcuGCGCCgGCUGCgGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 121191 0.79 0.102476
Target:  5'- gGCCGGgGCcgGGcCCGGgGCCGCGGGCCg -3'
miRNA:   3'- gCGGCUgCG--CC-GGCUgCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 121081 0.74 0.233689
Target:  5'- gCGCCG--GCGGCCGccaGCGCCucCAGGCCg -3'
miRNA:   3'- -GCGGCugCGCCGGC---UGCGGc-GUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 121024 0.69 0.471723
Target:  5'- cCGCUGGCGCGGgaGaaGCGCCGCcacacGUCg -3'
miRNA:   3'- -GCGGCUGCGCCggC--UGCGGCGuu---CGG- -5'
23850 5' -62.6 NC_005261.1 + 120963 0.75 0.198367
Target:  5'- gCGCCccGCGgGGCgCGugcCGCCGCAGGCCc -3'
miRNA:   3'- -GCGGc-UGCgCCG-GCu--GCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 120631 0.66 0.613096
Target:  5'- uGCUgGugGCGGCCcugugccugcGGCGCaaggCGCGGGCg -3'
miRNA:   3'- gCGG-CugCGCCGG----------CUGCG----GCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 120596 0.72 0.29314
Target:  5'- gGCCGucgccUGCGGCCucGGCGCCGUggGgCu -3'
miRNA:   3'- gCGGCu----GCGCCGG--CUGCGGCGuuCgG- -5'
23850 5' -62.6 NC_005261.1 + 120229 0.78 0.131439
Target:  5'- gCGCCGACGUGgagcGCCGcuuCGCCGCGGcuGCCa -3'
miRNA:   3'- -GCGGCUGCGC----CGGCu--GCGGCGUU--CGG- -5'
23850 5' -62.6 NC_005261.1 + 120004 0.78 0.122036
Target:  5'- gCGCCGgcuACGCGGCCGuguGCCGCGccGCCg -3'
miRNA:   3'- -GCGGC---UGCGCCGGCug-CGGCGUu-CGG- -5'
23850 5' -62.6 NC_005261.1 + 119885 0.67 0.554186
Target:  5'- aGCCGaggGCGUGuacacCUGGCGCCGCGAcgcgggcGCCa -3'
miRNA:   3'- gCGGC---UGCGCc----GGCUGCGGCGUU-------CGG- -5'
23850 5' -62.6 NC_005261.1 + 119640 0.67 0.564712
Target:  5'- gGCCGAcaaCGCcaCCGGCGgCGCGcGCCu -3'
miRNA:   3'- gCGGCU---GCGccGGCUGCgGCGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 119554 0.77 0.141507
Target:  5'- cCGCCG-CGgGGCCGcaaguggauGCGCUGCGAGCg -3'
miRNA:   3'- -GCGGCuGCgCCGGC---------UGCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 119494 0.72 0.286698
Target:  5'- aCGCCGGCGCcGCCGccCGCCaacaGCAcgcGGCCc -3'
miRNA:   3'- -GCGGCUGCGcCGGCu-GCGG----CGU---UCGG- -5'
23850 5' -62.6 NC_005261.1 + 119403 0.68 0.517386
Target:  5'- uGCCGGCacccuCGGCgCGACGCC-CAcAGCUc -3'
miRNA:   3'- gCGGCUGc----GCCG-GCUGCGGcGU-UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.