miRNA display CGI


Results 101 - 120 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 77000 0.79 0.111577
Target:  5'- uCGCCGcGCGCGcgcgccgcccuccucGCCGACGCCG-AGGCCg -3'
miRNA:   3'- -GCGGC-UGCGC---------------CGGCUGCGGCgUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 3841 0.79 0.11326
Target:  5'- gCGCUGGCggcaGCGgcGCCGGCGCCGCGcGGCCg -3'
miRNA:   3'- -GCGGCUG----CGC--CGGCUGCGGCGU-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 15730 0.79 0.11326
Target:  5'- aCG-CGACGgGGCCGucCGCgCGCAGGCCg -3'
miRNA:   3'- -GCgGCUGCgCCGGCu-GCG-GCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 31288 0.79 0.11326
Target:  5'- gGCCGAgauCGCGGcCCGcCGCCGCGcggGGCCc -3'
miRNA:   3'- gCGGCU---GCGCC-GGCuGCGGCGU---UCGG- -5'
23850 5' -62.6 NC_005261.1 + 46734 0.79 0.11326
Target:  5'- aCGCCGGCGCGuGCaCG-UGCCGCA-GCCc -3'
miRNA:   3'- -GCGGCUGCGC-CG-GCuGCGGCGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 42209 0.79 0.102476
Target:  5'- gCGCCG-CGCGGgCGcccCGCCGCGAGCUc -3'
miRNA:   3'- -GCGGCuGCGCCgGCu--GCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 95788 0.79 0.099935
Target:  5'- gCGCCGGCGCGcugcuaGCCGGCGCCgGCGggGGCUc -3'
miRNA:   3'- -GCGGCUGCGC------CGGCUGCGG-CGU--UCGG- -5'
23850 5' -62.6 NC_005261.1 + 132067 0.8 0.083747
Target:  5'- gGCCGAgguCGCGGCCGccguCGCCGCu-GCCg -3'
miRNA:   3'- gCGGCU---GCGCCGGCu---GCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 68696 0.8 0.085896
Target:  5'- gGCCGGCGCGGacgaCGGCGgCGCcGGCCc -3'
miRNA:   3'- gCGGCUGCGCCg---GCUGCgGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 102423 0.8 0.085896
Target:  5'- uGCCGcuGCGCGGCCGccuccucggcGCGCCGCccGGCCu -3'
miRNA:   3'- gCGGC--UGCGCCGGC----------UGCGGCGu-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 3409 0.8 0.085896
Target:  5'- cCGCCGGCG-GGCUGAagaGCgCGCGGGCCa -3'
miRNA:   3'- -GCGGCUGCgCCGGCUg--CG-GCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 33458 0.8 0.088098
Target:  5'- nCGCCGcCGCaGCCGcCGCCGC-AGCCg -3'
miRNA:   3'- -GCGGCuGCGcCGGCuGCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 35908 0.8 0.088098
Target:  5'- cCGCCGcggcaGCGCGGCCccGCGCCGCA-GCCc -3'
miRNA:   3'- -GCGGC-----UGCGCCGGc-UGCGGCGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 90750 0.8 0.09243
Target:  5'- gCGCUGGCGCGGgacuuccCCGAgGCCGCcgAGGCCg -3'
miRNA:   3'- -GCGGCUGCGCC-------GGCUgCGGCG--UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 20851 0.8 0.092664
Target:  5'- gGCagCGugGCGGCUcuuGCGCCGCGGGCCg -3'
miRNA:   3'- gCG--GCugCGCCGGc--UGCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 21779 0.8 0.09503
Target:  5'- aGCCGcCGCGGCgCGGgcCGCCGC-AGCCg -3'
miRNA:   3'- gCGGCuGCGCCG-GCU--GCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 48448 0.8 0.09503
Target:  5'- uGCgUGGCGCGGCCGGCGCgGuCAAcGCCg -3'
miRNA:   3'- gCG-GCUGCGCCGGCUGCGgC-GUU-CGG- -5'
23850 5' -62.6 NC_005261.1 + 105123 0.8 0.097453
Target:  5'- gCGCgGGCGCGggccGCCGGCGCgCGCAGGUCc -3'
miRNA:   3'- -GCGgCUGCGC----CGGCUGCG-GCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 81441 0.8 0.097453
Target:  5'- gGCCGcccCGCGGCgGGCGCCGCcAGCa -3'
miRNA:   3'- gCGGCu--GCGCCGgCUGCGGCGuUCGg -5'
23850 5' -62.6 NC_005261.1 + 64036 0.79 0.099935
Target:  5'- uCGUCGGCGCGGCUcuGCGCCGCGuggugcGCCa -3'
miRNA:   3'- -GCGGCUGCGCCGGc-UGCGGCGUu-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.