Results 101 - 120 of 1000 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 77000 | 0.79 | 0.111577 |
Target: 5'- uCGCCGcGCGCGcgcgccgcccuccucGCCGACGCCG-AGGCCg -3' miRNA: 3'- -GCGGC-UGCGC---------------CGGCUGCGGCgUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 3841 | 0.79 | 0.11326 |
Target: 5'- gCGCUGGCggcaGCGgcGCCGGCGCCGCGcGGCCg -3' miRNA: 3'- -GCGGCUG----CGC--CGGCUGCGGCGU-UCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 15730 | 0.79 | 0.11326 |
Target: 5'- aCG-CGACGgGGCCGucCGCgCGCAGGCCg -3' miRNA: 3'- -GCgGCUGCgCCGGCu-GCG-GCGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 31288 | 0.79 | 0.11326 |
Target: 5'- gGCCGAgauCGCGGcCCGcCGCCGCGcggGGCCc -3' miRNA: 3'- gCGGCU---GCGCC-GGCuGCGGCGU---UCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 46734 | 0.79 | 0.11326 |
Target: 5'- aCGCCGGCGCGuGCaCG-UGCCGCA-GCCc -3' miRNA: 3'- -GCGGCUGCGC-CG-GCuGCGGCGUuCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 42209 | 0.79 | 0.102476 |
Target: 5'- gCGCCG-CGCGGgCGcccCGCCGCGAGCUc -3' miRNA: 3'- -GCGGCuGCGCCgGCu--GCGGCGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 95788 | 0.79 | 0.099935 |
Target: 5'- gCGCCGGCGCGcugcuaGCCGGCGCCgGCGggGGCUc -3' miRNA: 3'- -GCGGCUGCGC------CGGCUGCGG-CGU--UCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 132067 | 0.8 | 0.083747 |
Target: 5'- gGCCGAgguCGCGGCCGccguCGCCGCu-GCCg -3' miRNA: 3'- gCGGCU---GCGCCGGCu---GCGGCGuuCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 68696 | 0.8 | 0.085896 |
Target: 5'- gGCCGGCGCGGacgaCGGCGgCGCcGGCCc -3' miRNA: 3'- gCGGCUGCGCCg---GCUGCgGCGuUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 102423 | 0.8 | 0.085896 |
Target: 5'- uGCCGcuGCGCGGCCGccuccucggcGCGCCGCccGGCCu -3' miRNA: 3'- gCGGC--UGCGCCGGC----------UGCGGCGu-UCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 3409 | 0.8 | 0.085896 |
Target: 5'- cCGCCGGCG-GGCUGAagaGCgCGCGGGCCa -3' miRNA: 3'- -GCGGCUGCgCCGGCUg--CG-GCGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 33458 | 0.8 | 0.088098 |
Target: 5'- nCGCCGcCGCaGCCGcCGCCGC-AGCCg -3' miRNA: 3'- -GCGGCuGCGcCGGCuGCGGCGuUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 35908 | 0.8 | 0.088098 |
Target: 5'- cCGCCGcggcaGCGCGGCCccGCGCCGCA-GCCc -3' miRNA: 3'- -GCGGC-----UGCGCCGGc-UGCGGCGUuCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 90750 | 0.8 | 0.09243 |
Target: 5'- gCGCUGGCGCGGgacuuccCCGAgGCCGCcgAGGCCg -3' miRNA: 3'- -GCGGCUGCGCC-------GGCUgCGGCG--UUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 20851 | 0.8 | 0.092664 |
Target: 5'- gGCagCGugGCGGCUcuuGCGCCGCGGGCCg -3' miRNA: 3'- gCG--GCugCGCCGGc--UGCGGCGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 21779 | 0.8 | 0.09503 |
Target: 5'- aGCCGcCGCGGCgCGGgcCGCCGC-AGCCg -3' miRNA: 3'- gCGGCuGCGCCG-GCU--GCGGCGuUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 48448 | 0.8 | 0.09503 |
Target: 5'- uGCgUGGCGCGGCCGGCGCgGuCAAcGCCg -3' miRNA: 3'- gCG-GCUGCGCCGGCUGCGgC-GUU-CGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 105123 | 0.8 | 0.097453 |
Target: 5'- gCGCgGGCGCGggccGCCGGCGCgCGCAGGUCc -3' miRNA: 3'- -GCGgCUGCGC----CGGCUGCG-GCGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 81441 | 0.8 | 0.097453 |
Target: 5'- gGCCGcccCGCGGCgGGCGCCGCcAGCa -3' miRNA: 3'- gCGGCu--GCGCCGgCUGCGGCGuUCGg -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 64036 | 0.79 | 0.099935 |
Target: 5'- uCGUCGGCGCGGCUcuGCGCCGCGuggugcGCCa -3' miRNA: 3'- -GCGGCUGCGCCGGc-UGCGGCGUu-----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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