Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23852 | 3' | -56.7 | NC_005261.1 | + | 71327 | 0.67 | 0.854383 |
Target: 5'- aGCACGUagccggccgcgagcgCGUCCUCGgUGagcgCCGAGAg- -3' miRNA: 3'- -UGUGCA---------------GCAGGAGCgGCa---GGCUCUac -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 72154 | 0.68 | 0.773984 |
Target: 5'- uGCACGUCcgggguGUCCgggauccCGgCGUCCGAGAc- -3' miRNA: 3'- -UGUGCAG------CAGGa------GCgGCAGGCUCUac -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 77010 | 0.73 | 0.506769 |
Target: 5'- cGCGCGcCGcccUCCUCGCCGacgCCGAGGc- -3' miRNA: 3'- -UGUGCaGC---AGGAGCGGCa--GGCUCUac -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 79646 | 0.67 | 0.858986 |
Target: 5'- aGCuCGUUGUCCUCGCCGagCUGGc--- -3' miRNA: 3'- -UGuGCAGCAGGAGCGGCa-GGCUcuac -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 81303 | 0.67 | 0.830334 |
Target: 5'- cGCACGUCcgugccguugucgggGUCgUCGCCGUCguCGGGGc- -3' miRNA: 3'- -UGUGCAG---------------CAGgAGCGGCAG--GCUCUac -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 88574 | 0.72 | 0.555662 |
Target: 5'- gACGCGUCccgCUUCGCCG-CCGAGGc- -3' miRNA: 3'- -UGUGCAGca-GGAGCGGCaGGCUCUac -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 93590 | 0.68 | 0.809941 |
Target: 5'- cGCGCGcUCGgcgaCCUCGCCGUcgccCCGGGu-- -3' miRNA: 3'- -UGUGC-AGCa---GGAGCGGCA----GGCUCuac -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 93934 | 0.67 | 0.827003 |
Target: 5'- -uGCGcCGUCCgcgggCGCCGccUCCGGGcgGu -3' miRNA: 3'- ugUGCaGCAGGa----GCGGC--AGGCUCuaC- -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 98985 | 0.73 | 0.497204 |
Target: 5'- aGCACGUCGUCCUCGgCaaucuucagCGUCgCGAGcgGc -3' miRNA: 3'- -UGUGCAGCAGGAGC-G---------GCAG-GCUCuaC- -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 99612 | 0.7 | 0.654447 |
Target: 5'- -aGCGUCGUCCacagCGCCGccagcaggucgcCCGGGAUGc -3' miRNA: 3'- ugUGCAGCAGGa---GCGGCa-----------GGCUCUAC- -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 99671 | 0.73 | 0.535911 |
Target: 5'- gAC-CGUCGUCagcgCGCUGcCCGGGAUGa -3' miRNA: 3'- -UGuGCAGCAGga--GCGGCaGGCUCUAC- -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 100816 | 0.66 | 0.880888 |
Target: 5'- gGCGCGUgCG-CCUgCGCCGcccaggCCGGGAg- -3' miRNA: 3'- -UGUGCA-GCaGGA-GCGGCa-----GGCUCUac -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 103227 | 0.67 | 0.818555 |
Target: 5'- aGCGCGcgcaGUCCUcCGCCGUCCGc---- -3' miRNA: 3'- -UGUGCag--CAGGA-GCGGCAGGCucuac -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 103584 | 0.67 | 0.827003 |
Target: 5'- cCGCGcCGUCgCUCGCCG-CCGuGGc- -3' miRNA: 3'- uGUGCaGCAG-GAGCGGCaGGCuCUac -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 106666 | 0.7 | 0.656471 |
Target: 5'- gGCGCgGUCGUCCagCGCgCGcCCGAGGg- -3' miRNA: 3'- -UGUG-CAGCAGGa-GCG-GCaGGCUCUac -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 106840 | 0.75 | 0.406661 |
Target: 5'- uGCGCGUCGUCCagccCGCCGcCUGGGGg- -3' miRNA: 3'- -UGUGCAGCAGGa---GCGGCaGGCUCUac -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 107533 | 0.72 | 0.575618 |
Target: 5'- aGCGCGUCGgcggCCaccaGCaCGUCCGAGAg- -3' miRNA: 3'- -UGUGCAGCa---GGag--CG-GCAGGCUCUac -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 108669 | 0.73 | 0.516412 |
Target: 5'- -gGCGUCGcgUCCUCGUCGUCCGGc--- -3' miRNA: 3'- ugUGCAGC--AGGAGCGGCAGGCUcuac -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 125244 | 0.66 | 0.894413 |
Target: 5'- uACACGuucUCGUCCUCacugguguccUCGUCCGGGGg- -3' miRNA: 3'- -UGUGC---AGCAGGAGc---------GGCAGGCUCUac -5' |
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23852 | 3' | -56.7 | NC_005261.1 | + | 128031 | 0.73 | 0.497204 |
Target: 5'- ---aGUCaUCCUCGUCGUCCGAGGa- -3' miRNA: 3'- ugugCAGcAGGAGCGGCAGGCUCUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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