miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23852 5' -53.8 NC_005261.1 + 5107 0.71 0.795833
Target:  5'- cACAGCUCCGccagcuCGGCGcGGGCGGCc- -3'
miRNA:   3'- uUGUUGAGGCu-----GCUGCuCCUGCUGcu -5'
23852 5' -53.8 NC_005261.1 + 135059 0.7 0.804897
Target:  5'- cGGCAGCggcccgccgcuuUCCGGCGGCGGGcucgcggcccGGCGGCGGa -3'
miRNA:   3'- -UUGUUG------------AGGCUGCUGCUC----------CUGCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 31440 0.7 0.813801
Target:  5'- uGGCGGCgCCGccCGGCGAGGACGAgCGc -3'
miRNA:   3'- -UUGUUGaGGCu-GCUGCUCCUGCU-GCu -5'
23852 5' -53.8 NC_005261.1 + 5512 0.7 0.831092
Target:  5'- cGCGGCagCGGCGGCGAGGcCGcCGGc -3'
miRNA:   3'- uUGUUGagGCUGCUGCUCCuGCuGCU- -5'
23852 5' -53.8 NC_005261.1 + 76554 0.7 0.831092
Target:  5'- uACGGCaUgGGCGACGAGGGCGAg-- -3'
miRNA:   3'- uUGUUGaGgCUGCUGCUCCUGCUgcu -5'
23852 5' -53.8 NC_005261.1 + 42172 0.7 0.839463
Target:  5'- aAGCGAg-CCGugGACGcAGGGCG-CGAg -3'
miRNA:   3'- -UUGUUgaGGCugCUGC-UCCUGCuGCU- -5'
23852 5' -53.8 NC_005261.1 + 76448 0.7 0.839463
Target:  5'- gGACGcGC-CCGACGGCGAcGGCGGCGc -3'
miRNA:   3'- -UUGU-UGaGGCUGCUGCUcCUGCUGCu -5'
23852 5' -53.8 NC_005261.1 + 40665 0.7 0.839463
Target:  5'- cAGCAGCUCCG-CGACGccgucgGGGAgcCGGCGc -3'
miRNA:   3'- -UUGUUGAGGCuGCUGC------UCCU--GCUGCu -5'
23852 5' -53.8 NC_005261.1 + 128872 0.69 0.847641
Target:  5'- ---cGCUgCCGACGACGAGG-CGGgGGc -3'
miRNA:   3'- uuguUGA-GGCUGCUGCUCCuGCUgCU- -5'
23852 5' -53.8 NC_005261.1 + 76869 0.69 0.855618
Target:  5'- uGGC-GC-CCGGCGAgGAGGcCGACGGc -3'
miRNA:   3'- -UUGuUGaGGCUGCUgCUCCuGCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 34308 0.69 0.855618
Target:  5'- gAGCGAgaCCGACGGgGAGGcCGAgGGg -3'
miRNA:   3'- -UUGUUgaGGCUGCUgCUCCuGCUgCU- -5'
23852 5' -53.8 NC_005261.1 + 43837 0.69 0.855618
Target:  5'- aAGCuGCUCggCGAgGGCGAGGACG-CGGc -3'
miRNA:   3'- -UUGuUGAG--GCUgCUGCUCCUGCuGCU- -5'
23852 5' -53.8 NC_005261.1 + 28654 0.69 0.863387
Target:  5'- uGACGAggCCGGCGGgGccGACGACGAc -3'
miRNA:   3'- -UUGUUgaGGCUGCUgCucCUGCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 136613 0.69 0.870943
Target:  5'- gAGCGGCgCgCGcGCGcCGAGGGCGGCGGg -3'
miRNA:   3'- -UUGUUGaG-GC-UGCuGCUCCUGCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 108863 0.69 0.870943
Target:  5'- aAGCGGCUCUGcaGCaGCGGguGGACGACGGc -3'
miRNA:   3'- -UUGUUGAGGC--UGcUGCU--CCUGCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 78414 0.69 0.870943
Target:  5'- ---uGCUCUGugGGCGAugggggGGGCGAUGGg -3'
miRNA:   3'- uuguUGAGGCugCUGCU------CCUGCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 88180 0.69 0.878279
Target:  5'- gGGCGACgCCGGCGGCGccGGCGagGCGGg -3'
miRNA:   3'- -UUGUUGaGGCUGCUGCucCUGC--UGCU- -5'
23852 5' -53.8 NC_005261.1 + 3848 0.68 0.88539
Target:  5'- cGGCAGCggcgCCGGCGccGCGcGGcCGGCGAg -3'
miRNA:   3'- -UUGUUGa---GGCUGC--UGCuCCuGCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 55996 0.68 0.89227
Target:  5'- cGGCAAC-CgCGGCGgggGCGGGGGCGGgGAa -3'
miRNA:   3'- -UUGUUGaG-GCUGC---UGCUCCUGCUgCU- -5'
23852 5' -53.8 NC_005261.1 + 98048 0.68 0.89227
Target:  5'- uGGCGGCcgCgGGCGGCGGgaccgcGGGCGGCGGg -3'
miRNA:   3'- -UUGUUGa-GgCUGCUGCU------CCUGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.