miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23852 5' -53.8 NC_005261.1 + 98048 0.68 0.89227
Target:  5'- uGGCGGCcgCgGGCGGCGGgaccgcGGGCGGCGGg -3'
miRNA:   3'- -UUGUUGa-GgCUGCUGCU------CCUGCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 55996 0.68 0.89227
Target:  5'- cGGCAAC-CgCGGCGgggGCGGGGGCGGgGAa -3'
miRNA:   3'- -UUGUUGaG-GCUGC---UGCUCCUGCUgCU- -5'
23852 5' -53.8 NC_005261.1 + 60313 0.68 0.89227
Target:  5'- -uCGGCUgaGACGAUcAGGugGACGAc -3'
miRNA:   3'- uuGUUGAggCUGCUGcUCCugCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 119691 0.68 0.898917
Target:  5'- cGGCAGgUCCcgcuccacgcgcGGCGAUGAGGAgGGCGu -3'
miRNA:   3'- -UUGUUgAGG------------CUGCUGCUCCUgCUGCu -5'
23852 5' -53.8 NC_005261.1 + 68603 0.68 0.898917
Target:  5'- gAGCGGggCCGACGGCGuGGGgGAgGAu -3'
miRNA:   3'- -UUGUUgaGGCUGCUGCuCCUgCUgCU- -5'
23852 5' -53.8 NC_005261.1 + 43684 0.68 0.898917
Target:  5'- cAGCGGCUCC-ACGGCGAGGuccUGGCc- -3'
miRNA:   3'- -UUGUUGAGGcUGCUGCUCCu--GCUGcu -5'
23852 5' -53.8 NC_005261.1 + 16460 0.68 0.898917
Target:  5'- -uCGACUCCucaaaguACGGCG-GGACGACGc -3'
miRNA:   3'- uuGUUGAGGc------UGCUGCuCCUGCUGCu -5'
23852 5' -53.8 NC_005261.1 + 121247 0.68 0.90151
Target:  5'- -cCAGCUCCGACucgggguccgccgcaGACG-GGGCGGCc- -3'
miRNA:   3'- uuGUUGAGGCUG---------------CUGCuCCUGCUGcu -5'
23852 5' -53.8 NC_005261.1 + 14355 0.68 0.905327
Target:  5'- cGGCAGCagCCG-CGGCcGGGGCGGCGc -3'
miRNA:   3'- -UUGUUGa-GGCuGCUGcUCCUGCUGCu -5'
23852 5' -53.8 NC_005261.1 + 4529 0.68 0.911495
Target:  5'- --gGGCgCCG-CGGCGAGGGCGcCGGg -3'
miRNA:   3'- uugUUGaGGCuGCUGCUCCUGCuGCU- -5'
23852 5' -53.8 NC_005261.1 + 59781 0.68 0.911495
Target:  5'- cGGCcGCagCGACGGCGGcGGGCGGCa- -3'
miRNA:   3'- -UUGuUGagGCUGCUGCU-CCUGCUGcu -5'
23852 5' -53.8 NC_005261.1 + 128447 0.68 0.917421
Target:  5'- gAACAGCg-CGGCGgucGCGAGcACGACGAg -3'
miRNA:   3'- -UUGUUGagGCUGC---UGCUCcUGCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 22064 0.67 0.922546
Target:  5'- cAGgGGCUCCGGCGGggcuCGAGGgggcgccGCGugGGg -3'
miRNA:   3'- -UUgUUGAGGCUGCU----GCUCC-------UGCugCU- -5'
23852 5' -53.8 NC_005261.1 + 85547 0.67 0.923103
Target:  5'- gGGCGGCUCCGucuGCGgcgccGCGAGGuuCGGCGc -3'
miRNA:   3'- -UUGUUGAGGC---UGC-----UGCUCCu-GCUGCu -5'
23852 5' -53.8 NC_005261.1 + 76732 0.67 0.923103
Target:  5'- cGCAGCUggCCGACGugcuCGcGGACGugGc -3'
miRNA:   3'- uUGUUGA--GGCUGCu---GCuCCUGCugCu -5'
23852 5' -53.8 NC_005261.1 + 98386 0.67 0.928539
Target:  5'- cGCAAUaCCGGCGugG-GGGCGggcGCGGa -3'
miRNA:   3'- uUGUUGaGGCUGCugCuCCUGC---UGCU- -5'
23852 5' -53.8 NC_005261.1 + 47877 0.67 0.93373
Target:  5'- cGGCAGCgUCCGgggaGCGGCGGcGGCGGCGc -3'
miRNA:   3'- -UUGUUG-AGGC----UGCUGCUcCUGCUGCu -5'
23852 5' -53.8 NC_005261.1 + 100180 0.67 0.93373
Target:  5'- cGCAACgCCGugGCGGCGGGGcaGCGugGc -3'
miRNA:   3'- uUGUUGaGGC--UGCUGCUCC--UGCugCu -5'
23852 5' -53.8 NC_005261.1 + 69334 0.67 0.93373
Target:  5'- cGGCGACagCGACGGaGAcGGCGACGAc -3'
miRNA:   3'- -UUGUUGagGCUGCUgCUcCUGCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 110217 0.67 0.93373
Target:  5'- cGCAACcUCGGCGACGccuccagcguGGGCGGCGc -3'
miRNA:   3'- uUGUUGaGGCUGCUGCu---------CCUGCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.