Results 61 - 80 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23852 | 5' | -53.8 | NC_005261.1 | + | 121247 | 0.68 | 0.90151 |
Target: 5'- -cCAGCUCCGACucgggguccgccgcaGACG-GGGCGGCc- -3' miRNA: 3'- uuGUUGAGGCUG---------------CUGCuCCUGCUGcu -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 16460 | 0.68 | 0.898917 |
Target: 5'- -uCGACUCCucaaaguACGGCG-GGACGACGc -3' miRNA: 3'- uuGUUGAGGc------UGCUGCuCCUGCUGCu -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 43684 | 0.68 | 0.898917 |
Target: 5'- cAGCGGCUCC-ACGGCGAGGuccUGGCc- -3' miRNA: 3'- -UUGUUGAGGcUGCUGCUCCu--GCUGcu -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 68603 | 0.68 | 0.898917 |
Target: 5'- gAGCGGggCCGACGGCGuGGGgGAgGAu -3' miRNA: 3'- -UUGUUgaGGCUGCUGCuCCUgCUgCU- -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 119691 | 0.68 | 0.898917 |
Target: 5'- cGGCAGgUCCcgcuccacgcgcGGCGAUGAGGAgGGCGu -3' miRNA: 3'- -UUGUUgAGG------------CUGCUGCUCCUgCUGCu -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 55996 | 0.68 | 0.89227 |
Target: 5'- cGGCAAC-CgCGGCGgggGCGGGGGCGGgGAa -3' miRNA: 3'- -UUGUUGaG-GCUGC---UGCUCCUGCUgCU- -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 60313 | 0.68 | 0.89227 |
Target: 5'- -uCGGCUgaGACGAUcAGGugGACGAc -3' miRNA: 3'- uuGUUGAggCUGCUGcUCCugCUGCU- -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 98048 | 0.68 | 0.89227 |
Target: 5'- uGGCGGCcgCgGGCGGCGGgaccgcGGGCGGCGGg -3' miRNA: 3'- -UUGUUGa-GgCUGCUGCU------CCUGCUGCU- -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 112915 | 0.68 | 0.89227 |
Target: 5'- cGCuGCgugCgCGAgGGCGAGGGCGGCGc -3' miRNA: 3'- uUGuUGa--G-GCUgCUGCUCCUGCUGCu -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 99780 | 0.68 | 0.89227 |
Target: 5'- aGGCGGC-CCGggucccagucGCGGCGcGGAUGGCGAa -3' miRNA: 3'- -UUGUUGaGGC----------UGCUGCuCCUGCUGCU- -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 3848 | 0.68 | 0.88539 |
Target: 5'- cGGCAGCggcgCCGGCGccGCGcGGcCGGCGAg -3' miRNA: 3'- -UUGUUGa---GGCUGC--UGCuCCuGCUGCU- -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 88180 | 0.69 | 0.878279 |
Target: 5'- gGGCGACgCCGGCGGCGccGGCGagGCGGg -3' miRNA: 3'- -UUGUUGaGGCUGCUGCucCUGC--UGCU- -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 78414 | 0.69 | 0.870943 |
Target: 5'- ---uGCUCUGugGGCGAugggggGGGCGAUGGg -3' miRNA: 3'- uuguUGAGGCugCUGCU------CCUGCUGCU- -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 136613 | 0.69 | 0.870943 |
Target: 5'- gAGCGGCgCgCGcGCGcCGAGGGCGGCGGg -3' miRNA: 3'- -UUGUUGaG-GC-UGCuGCUCCUGCUGCU- -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 108863 | 0.69 | 0.870943 |
Target: 5'- aAGCGGCUCUGcaGCaGCGGguGGACGACGGc -3' miRNA: 3'- -UUGUUGAGGC--UGcUGCU--CCUGCUGCU- -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 28654 | 0.69 | 0.863387 |
Target: 5'- uGACGAggCCGGCGGgGccGACGACGAc -3' miRNA: 3'- -UUGUUgaGGCUGCUgCucCUGCUGCU- -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 34308 | 0.69 | 0.855618 |
Target: 5'- gAGCGAgaCCGACGGgGAGGcCGAgGGg -3' miRNA: 3'- -UUGUUgaGGCUGCUgCUCCuGCUgCU- -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 76869 | 0.69 | 0.855618 |
Target: 5'- uGGC-GC-CCGGCGAgGAGGcCGACGGc -3' miRNA: 3'- -UUGuUGaGGCUGCUgCUCCuGCUGCU- -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 43837 | 0.69 | 0.855618 |
Target: 5'- aAGCuGCUCggCGAgGGCGAGGACG-CGGc -3' miRNA: 3'- -UUGuUGAG--GCUgCUGCUCCUGCuGCU- -5' |
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23852 | 5' | -53.8 | NC_005261.1 | + | 128872 | 0.69 | 0.847641 |
Target: 5'- ---cGCUgCCGACGACGAGG-CGGgGGc -3' miRNA: 3'- uuguUGA-GGCUGCUGCUCCuGCUgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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